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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCGTTACAACTACAAGCCCCTCCAAGACGACGTCGAATTGGGCTCCTTCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaacgataaccagattttctctgtctctgtgtctttctgggttaatgaatattattattattattattattactatgttgttgtttctgggccag

Basic information

species Glycine max
transcript GLYMA17G05350.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05350.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0061g01230.t01 (Vitis vinifera), 5'ss of exon 1
ACAGCGTTACAACTACAAGCCCCTCCAAGACGACGTCGAATTGGGCTCCTTCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaacgataaccagattttctctgtctctgtgtctttctgggttaatgaatattattattatt----attattattacta-tgttgttgtttctgggccag-----------------------------------------------------------------------------------------
  |||||||||| |   ||||||| |  || ||| | || |  ||   ||  |  ||||||   ||  |  | ||||||||||||| |||||||||||||||| |||  |   |  |  | | | ||  | |||   |  |||||   |  |  || || |||| |||    |||||  || ||  | ||  | |||||                                                                                                
TAAGCGTTACAAATGGGAGCCCCTGCGTGAAGACTTGGAGTCCGGTAACTCGAATTTCCCCCATGTGGTCGTGCAAATCCCAATGTACAACGAAAAAGAGgtatcaat-ctccactctcactctgtcc-tttctcacttcttctgccatcgttgattttcttatgattcagcattatcgtttcttcttttcctttttctttttttttttttgtttttttctcgcaattttaatgttgggtttccgggaaaactctaaagtcgattgctttttctgttcatgggtgtctgggtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533896|gb|EH262029.1|EH262029
EST:     TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAG                         GTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
genomic: TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaac ... tctgggccagGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
EST: gi|120528906|gb|EH257040.1|EH257040
EST:     TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAG                         GTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
genomic: TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaac ... tctgggccagGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
EST: gi|298188262|gb|HO034955.1|HO034955
EST:     TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAG                         GTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
genomic: TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaac ... tctgggccagGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC