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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttctttttcaaaccgcttttctgtttgtgtgtggcattcggaattcattttctagttcgtttaaatcttgtgttgtttctggttcttatcttt...

Basic information

species Glycine max
transcript GLYMA17G04210.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04210.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g22520.1 (Oryza sativa), 5'ss of exon 1
CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgt--------tcattttctttttcaaaccgcttttctgtttgtgtgtggcattcggaattcattttctagttcgtttaaatcttgtgttgtttctggttcttatcttt
|| ||||| || |||||||| || || || ||||| |||||||| ||| | ||||| |||||||| || |||||||||||||| |||||||| |||||||| || ||| | | || | || | | || | | || | ||||| || | || ||| | |
GGCGATCAAGGCGGCGCAGCTGGGGCTCAAGACCACCTGCATCGAGAAGAGGGGCACCCTCGGCGGGACATGCCTCAACGTCGGCTGCATCCCCTCCAAGgtgaccacgacgatgctctccccctcgtccctccccctctttttcgatctcctctctactgtcttgcgggttcggttgaggtggatgcgattttagatct--------

upper sequence: GLYMA17G04210.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g06750.1 (Oryza sativa), 5'ss of exon 1
CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgt-tcattttctttttcaaaccgcttttctgt-ttgtg-tgtggcattcggaattcattttctagttcgtttaaatcttgtgttgtttctggttcttatcttt
||||||||| || |||||||| || || || ||||| |||||||| ||| | || || ||||| || ||||||||||||||||| |||||||| |||||||| || || || || | | || | | | | ||| || | | | ||| ||| | | | | | || |
CGCCATCAAGGCGGCGCAGCTAGGGCTCAAGACCACCTGCATCGAGAAGAGGGGAACGCTCGGGGGCACCTGCCTCAACGTCGGCTGCATCCCCTCCAAGgtatcgccccctccctcccgccccgtctccgcgccgcgatctgggatggatggctgcgcgttccccgctgttagctctcggagagctcgtagatccgtgc---

upper sequence: GLYMA17G04210.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G462140_T01 (Zea mays), 5'ss of exon 1
CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgtt---cattttctttttcaaaccgcttttctgtttgtgtgtggcattcggaattcattttctagttcgtttaaatcttgtgttgtttctggttcttatcttt
|| ||||| ||||||||||| || || || ||||| |||||||| ||| | |||||||||||||| |||||||||||||||||||||||||| |||||||| | | || | | |||| || | || |||| || || ||| || | || ||||| | ||| | |
GGCGATCAAGGCCGCGCAGCTGGGGCTCAAGACCACCTGCATCGAGAAGAGGGGCACTCTCGGCGGGACCTGCCTCAACGTCGGATGCATCCCATCCAAGgtgatgccctagctcgtcttctcagcttctcgctctggtaaccccattgctgtgccaccaatctctttgttgcgatgtgatgatgttt---gatctggggtat

upper sequence: GLYMA17G04210.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G335657_T01 (Zea mays), 5'ss of exon 1
CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgt--tcattttctttttcaaaccgcttttctgtttgtgtgtggcattcggaattcattttctagttcgtttaaatcttgtgttgtttctggttctt-atcttt
|| ||||| ||||||||||| || || || ||||| |||||||| ||| | ||||| |||||||| ||||| ||||||||||||||||| || |||||||| | | | | | || | ||| | || | | | || | | ||| || | ||| | || ||| | |||| |
GGCGATCAAGGCCGCGCAGCTGGGGCTCAAGACCACCTGCATCGAGAAGAGGGGCACCCTCGGCGGGACCTGTCTCAACGTCGGATGCATTCCATCCAAGgtgatgccctagctcgccgtctccctctcctgcccccat-tgctgtactacaccaatctctttgttg--ctacgtgatgtatgactttgggtgttagatctgt

upper sequence: GLYMA17G04210.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G48030.1 (Arabidopsis thaliana), 5'ss of exon 1
CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc-------------tttttcaaaccgcttttctgtttgtgtgtggc-attcgga---attcattttctag----ttcgtttaaatcttg-----tgttgtttctggttcttatcttt------------------------------------------------------------
||| ||||||||| | ||||| ||||| ||||||||||| ||||| || || ||| ||||||| ||||| || ||||||||||| ||||| ||||||||||| | |||| ||| | || | ||| || | | || | ||| || ||| |||| | | ||| ||| | || ||| ||| || | ||||| ||
CGCGATCAAAGCCTCTCAGCTTGGTCTCAAAACCACTTGTATCGAGAAACGCGGCGCTCTCGGTGGTACTTGTCTCAACGTCGGTTGCATTCCTTCCAAGgtcaaatttcgaatcatctctcgtttcttcaatcaatttgttgatcatagttgacgattttgatctgttccttttgtggatgattcttttgagagttaattactgtcttttgtgatgattatcatttgcttaagcacagttattccataattactaaattcttggttgtgtttattgatgtattag

upper sequence: GLYMA17G04210.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G17240.3 (Arabidopsis thaliana), 5'ss of exon 1
CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttctttttcaaaccgcttttctgtttgtgtgtggcattcggaattcattttctagtt-cgtttaaatcttgtgttgttt-ctggttc-ttatcttt---
|| || ||||| || ||||||||||| || || || || ||||||||||| ||| ||||||| ||||| || || |||||||| || || ||||| ||||| |||| |||| |||||| | || | |||||| | | | | | || | || || |||| || || ||| | ||| ||
GGCGATTAAAGCGGCACAGCTCGGTCTTAAGACTACCTGTATCGAAAAGCGAGGCGCTCTCGGTGGTACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGgtga------ttttagaaactccttttccgattaccttgattcgtcggaaattttctccgattttcattcgtctcctgtggaacttgctcgttgatcatcatttag

upper sequence: GLYMA17G04210.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0020g00380.t01 (Vitis vinifera), 5'ss of exon 1
CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttctttttcaaaccgcttttctgtttgtgtgtggcattcggaattcattttctagttcgtttaaatcttgtgttgtttctggttcttatcttt--------
|||||| ||||| || ||||| ||||| || ||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| || || ||||||||||| || | |||| ||||| | | | | | | ||| | ||| || | | || | | || |||| | | | || || | |
CGCCATTAAAGCTGCCCAGCTTGGTCTCAAGACCACCTGTATCGAGAAGCGCGGCACTCTCGGCGGTACCTGTCTCAACGTCGGTTGTATTCCTTCCAAGgta-atatagggtttc------cttttttttcttttttggaaatttttatttctcttgttggatc-tgtggattttgttgtttgtttgatttctggcgactttgtgtt

upper sequence: GLYMA17G04210.1 (Glycine max), 5'ss of exon 1
lower sequence: EDP01871 (Chlamydomonas reinhardtii), 5'ss of exon 2
CGCCATCAAAGCCGCGCAGCTCGGTCTGAAAACCACTTGCATCGAAAAGCGTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttctttttcaaaccgcttttctgtttgtgtgtggcattc---ggaattcattttctagttcgtttaaatcttgtgttgtttctggttcttatcttt
|| ||||| ||||||||||| ||||| | | | ||| | || ||||||| | || ||||| |||||||||||||| || |||||||| |||||||| | | | | | || | | |||| ||| || | | | || | | | | || |
GGCTATCAAGGCCGCGCAGCTGGGTCTCAGCGTCGCCTGCGTGGAGGGGCGTGGCGCGCTGGGCGGCACCTGCCTCAACGTGGGCTGCATCCCCTCCAAGgtgtggcgccgggggctgagcattaaggtggtgggaggtggggccgaggggaggccaatggcagccgcaacgggggctgggatggggacacgtagtaggg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717584|gb|BW653973.1|BW653973
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|120530876|gb|EH259009.1|EH259009
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|209718790|gb|BW671991.1|BW671991
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|120530885|gb|EH259018.1|EH259018
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|209727110|gb|BW655202.1|BW655202
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|209719097|gb|BW659386.1|BW659386
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|209721711|gb|BW682552.1|BW682552
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|16281784|gb|BI944667.1|BI944667
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|120530916|gb|EH259049.1|EH259049
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|209711247|gb|BW683610.1|BW683610
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|33390120|gb|CA853327.1|CA853327
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|16276630|gb|BI941960.1|BI941960
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|209698013|gb|BW675631.1|BW675631
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|254337305|gb|GR845088.1|GR845088
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|120530851|gb|EH258984.1|EH258984
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|213603449|gb|DB970490.1|DB970490
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|213616663|gb|DB971216.1|DB971216
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|19453240|gb|BM954650.1|BM954650
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|213596817|gb|DB958053.1|DB958053
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|213605846|gb|DB968612.1|DB968612
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|213617532|gb|DB969244.1|DB969244
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|213589892|gb|DB959461.1|DB959461
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|120530793|gb|EH258926.1|EH258926
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|209726575|gb|BW666493.1|BW666493
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|9986380|gb|BE660488.1|BE660488
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|16276775|gb|BI942037.1|BI942037
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
EST: gi|213605008|gb|DB956355.1|DB956355
EST:     GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAG                         GCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC
genomic: GTGGCACTCTCGGCGGTACCTGCCTCAACGTCGGATGCATCCCTTCCAAGgttcattttc ... tttggtacagGCACTTCTGCATTCTTCCCACATGTATCATGAGGCTAAACATGCATTTGCC