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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCCGCACTCGAAGAAGCTCAGCTTCGTTTCGATAATTTGAAGTCCAAATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctctctctctctcaatttctaaattttctatttctttttctctcttaattgtttagtttttatgataagagattagaatattgcggtgtttcacgattattttggtttctgcggtgcag

Basic information

species Glycine max
transcript GLYMA17G03990.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298199023|gb|HO042386.1|HO042386
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
EST: gi|209699970|gb|BW661199.1|BW661199
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
EST: gi|193577947|gb|FK537027.1|FK537027
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACA
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACA
EST: gi|213611707|gb|DB969095.1|DB969095
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
EST: gi|298190390|gb|HO032511.1|HO032511
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
EST: gi|192321624|gb|FK013968.1|FK013968
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
EST: gi|208192805|gb|GD989240.1|GD989240
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGG
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGG
EST: gi|13481495|gb|BG510838.1|BG510838
EST:     GTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: GTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
EST: gi|19453433|gb|BM954843.1|BM954843
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
EST: gi|213597925|gb|DB958306.1|DB958306
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
EST: gi|209712397|gb|BW671249.1|BW671249
EST:     ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTG                         GAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC
genomic: ATTCGTCGAAATCTTCGGTCATCATCCTCAAATCTTCGCTCGCTCACCTGgttcttctct ... tgcggtgcagGAAGAGTGAACTTGATTGGGGAGCACATTGATTATGAAGGTTATTCGGTGC