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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAACCCGGTCACCCTCAGTGGCACCACGGAGCCTTCCACGACGTAAGAGACAGCGTCCGATCCGACGTTCGCCGCATGCTTCATTCTCGCGCTGAGgtattttcttttttcgtcaccacaaaaatcaaaatcacaatcactatccaattaattgatgtgttattttaagtgtgaatgcttttgtctgtggttcgtgtag

Basic information

species Glycine max
transcript GLYMA17G03870.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03870.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g19690.2 (Oryza sativa), 5'ss of exon 1
GAGAGAACCCGGTCACCCTCAGTGGCACCACGGAGCCTTCCACGACGTAAGAGACAGCGTCCGATCCGACGTTCGCCGCATGCTTCATTCTCGCGCTGAGgtattttcttttttcgtcaccacaaaaatcaaaatcacaatcactatccaattaattgatgtgttattttaagtgtgaatgcttttgtctgtggttcgtgtag-
  | || ||||| ||||| |||||||||||||| || |||||||||||    |||||||||||  ||||||| ||||||||||| ||  | ||||| ||||||  ||  |    | ||  |||    |||     | |        ||   |       |    | | |   |   | |  |   || |    ||      || 
CCGGGATCCCGGCCACCCGCAGTGGCACCACGGCGCTTTCCACGACGTCGAGGACAGCGTCCGCGCCGACGTGCGCCGCATGCTCCACACGCGCGCAGAGgtaacttact----catcgtcactctcatccccccctcgtcgctcgtcggctccccccgttaaatctctctcgcccgcacacgagtggcgcacgtcgacagagg

upper sequence: GLYMA17G03870.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0077g00820.t01 (Vitis vinifera), 5'ss of exon 1
GAGAGAACCCGGTCACCCTCAGTGGCACCACGGAGCCTTCCACGACGTAAGAGACAGCGTCCGATCCGACGTTCGCCGCATGCTTCATTCTCGCGCTGAGgtatt--ttcttttttcgtcaccacaaaaatcaaaatcacaatcactatccaattaattgatgtgttattttaagtgtgaatgcttttgtctgtggttcgtgtag
| |||| || || || ||||||||||||||||| || || ||||| || ||||| || |||||||| || |||||||||||||| ||| | || || ||||||||  |  |   || |    | |  |||    ||  | ||| |        | ||    | ||    ||  | | |  ||||||  |  |    ||  |    
GCGAGACCCGGGGCATCCTCAGTGGCACCACGGGGCTTTTCACGAGGTCAGAGATAGTGTCCGATCTGATGTTCGCCGCATGCTCCATACGCGTGCCGAGgtattcgtcttccctttggttgctcggaaactgcaagaa-aatgaaggaatgttaaaagattatgaatcttcgatttttgatgcttcagatt-cacttaatc---