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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATAAGAGGTCGAGGTTATTAGCCTGCCTTTGTCAGTGCTTTCTATTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctccttctttctccgacgagagtgagacctatttgttgtttatgaatgttgaatatgcattttgcag

Basic information

species Glycine max
transcript GLYMA17G00820.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403703|gb|BE059399.1|BE059399
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|193417062|gb|FK382096.1|FK382096
EST:     TTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATTG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAA
genomic: TTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAA-TGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAA
EST: gi|15204823|gb|BI427591.1|BI427591
EST:     CAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: CAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|298176095|gb|HO015500.1|HO015500
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCGGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|8827670|gb|BE211400.1|BE211400
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|17023714|gb|BM094748.1|BM094748
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|10235986|gb|BE804874.1|BE804874
EST:     TTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|16348388|gb|BI973983.1|BI973983
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|20812203|gb|BQ296681.1|BQ296681
EST:     GTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|9901176|gb|BE610144.1|BE610144
EST:     GTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|15203867|gb|BI426635.1|BI426635
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|6915047|gb|AW396577.1|AW396577
EST:     GTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|213588813|gb|DB967921.1|DB967921
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|193576045|gb|FK532190.1|FK532190
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGAT
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGAT
EST: gi|12687924|gb|BG154320.1|BG154320
EST:     GTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|6914871|gb|AW396401.1|AW396401
EST:     TCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|7232494|gb|AW567849.1|AW567849
EST:     CGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: CGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|298173242|gb|HO020226.1|HO020226
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|298193102|gb|HO033536.1|HO033536
EST:     GAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|209704235|gb|BW683463.1|BW683463
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|14259294|gb|BG882202.1|BG882202
EST:     GTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|24205754|gb|BU965007.1|BU965007
EST:     TTGTTGTTGGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTG
genomic: TTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTG
EST: gi|8283507|gb|BE021066.1|BE021066
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|4397407|gb|AI496404.1|AI496404
EST:     CCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: CCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|16347817|gb|BI973412.1|BI973412
EST:     GCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|15287605|gb|BI471496.1|BI471496
EST:     GTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|209727587|gb|BW663773.1|BW663773
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|19935873|gb|BQ080622.1|BQ080622
EST:     GTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|209705081|gb|BW667753.1|BW667753
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|298180758|gb|HO022197.1|HO022197
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|7041729|gb|AW471623.1|AW471623
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|9258897|gb|BE347044.1|BE347044
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|15338260|gb|BI498916.1|BI498916
EST:     GTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|18734789|gb|BM528389.1|BM528389
EST:     TTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|20448350|gb|BQ252474.1|BQ252474
EST:     GTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: GTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
EST: gi|13312081|gb|BG405732.1|BG405732
EST:     TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATG                         GCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG
genomic: TTTGTTCATTTTGTTGTTCGAAGCCAAAACCCTAGCAGCCGGCGAGAATGgtgagttctc ... cattttgcagGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAG