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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGATGTAGACGCAGACGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttccttaatcctttctttcttctcagattcaattcaacacagtctctcttcattccttcatttcttttcattaattcttccatcttcaactctctc...

Basic information

species Glycine max
transcript GLYMA17G00740.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182122|gb|HO026297.1|HO026297
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTTAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|209697566|gb|BW660573.1|BW660573
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|213607081|gb|DB966986.1|DB966986
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|192317031|gb|FK007826.1|FK007826
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|208240344|gb|GE041376.1|GE041376
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|213587960|gb|DB957433.1|DB957433
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|209722848|gb|BW682907.1|BW682907
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|192319504|gb|FK009486.1|FK009486
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|192317030|gb|FK007825.1|FK007825
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: gi|209704179|gb|BW664797.1|BW664797
EST:     CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG                         CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGATGTAGACGCAGACGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttccttaatcctttctttcttctcagattcaattcaacacagtctctcttcattccttcatttcttttcattaattcttccatcttcaactctctc

- - - - - - - - - - -  AGATCA
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