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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATTCCATGCGCCAAGCCGCCGCCGTCCTCGCCGACGAAGATGTCGACAACTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTTgtaagtttttcttgtctctcaattatcaatcatgttatgtgttgtattggatccgttatgaatgaatacaatacaattgctatggtggactggatcag

Basic information

species Glycine max
transcript GLYMA17G00480.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 1
CGATTCCATGCGCCAAGCCGCCGCCGTCCTCGCCGACGAAGATGTCGACAA---------CTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTTgtaagtttttcttgtctctcaattatcaatcat-gttatgtgttgtattggatccgttatgaatgaatacaata--caattgctatggtggactggatcag---
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---------GAAGCAGGCGGCGTCTCTCCTCGCCGACGAAGATCCCGACGAAACCTCTTCTTCCAAGCGCCCTGCCACTTTCCTCAACGTCGTTGCCTTGGGAAATGTGgtgagttcctc---gctctcactccacgctcctcgattttcctctctttaggctcgtgctggttttattctgtgttcgagtg-tatgttggattgccatatcgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254318683|gb|GR828627.1|GR828627
EST:     ACTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTT                         GGTGCTGGAAAATCTGCTTCCTTGAATAGCCTCATTGGACATCCTGTTTTG
genomic: ACTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTTgtaagttttt ... actggatcagGGTGCTGGAAAATCTGCTTCCTTGAATAGCCTCATTGGACATCCTGTTTTG