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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTCGTGAGTGGTGACGTGCCCTAGCCCCATATCTAGTCTCCCTCTCTCAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctctttagtttctgttttgatctggtttgtgaattgcgagtgttgtactgaatgctgattcatgctttgaagctcattggtagcgcattcgtt...

Basic information

species Glycine max
transcript GLYMA17G00250.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396313|gb|AI495310.1|AI495310
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|151409763|gb|EV279571.1|EV279571
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|298194297|gb|HO040945.1|HO040945
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|254326666|gb|GR832818.1|GR832818
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|298184274|gb|HO029487.1|HO029487
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCGCGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|298166707|gb|HO010146.1|HO010146
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|192326423|gb|FK015925.1|FK015925
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAACCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|298178229|gb|HO023964.1|HO023964
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|7795909|gb|AW781306.1|AW781306
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: gi|15286015|gb|BI469906.1|BI469906
EST:     CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG                         GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT