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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCCTCATCCTTGGTCTAGTTATATATACCTCACTCACGGATTGAAGAAGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggttttatttttctctgatattcctaatccaatttcataaattatccctttaattttggttaatctttcatgggttttccttttcttgctcgaaagt...

Basic information

species Glycine max
transcript GLYMA16G34660.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165084|gb|HO011133.1|HO011133
EST:     AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG                         GGTTCGGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|192302694|gb|FG993714.1|FG993714
EST:     AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|22524321|gb|BU083132.1|BU083132
EST:     AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|6072588|gb|AW101975.1|AW101975
EST:     TCAAATCTGCAAACTAGGCTTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: TCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|22524199|gb|BU083010.1|BU083010
EST:     AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|22524381|gb|BU083192.1|BU083192
EST:     AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|23732021|gb|BU764165.1|BU764165
EST:     ACTAGGCTTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: ACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|151400455|gb|EV270269.1|EV270269
EST:     AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|192302695|gb|FG993715.1|FG993715
EST:     TTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: TTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: gi|151400687|gb|EV270501.1|EV270501
EST:     AACGCCCATTTCAGCTCAAATCTGCAAACTGGGCTTTTTCCCAACG                         GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTCCTCATCCTTGGTCTAGTTATATATACCTCACTCACGGATTGAAGAAGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggttttatttttctctgatattcctaatccaatttcataaattatccctttaattttggttaatctttcatgggttttccttttcttgctcgaaagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA