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GAGAGAGTATGAGTAACGTGACAGAGAAATTGGGCATCAAGATTGAGAGGAACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAAgtatactacttcttttctttgccctcttcctctttttcttacttttgccctaaattttatatatacatttattgcttggtcttcttgagtattgtggttg...
species | Glycine max |
transcript | GLYMA16G33050.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAA ATGGGGTTGTCCTCCAAGCAAATTCCCGTGGACATATGAATCTAAAGAGACEST: gi|208217164|gb|GE013880.1|GE013880
genomic: AACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAAgtatactact ... tgtaaaacagATGGGGTTGTCCTCCAAGCAAATTCCCGTGGACATATGAATCTAAAGAGAC
EST: AACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAA ATGGGGTTGTCCTCCAAGCAAATTCCCGTGGACATATGAATCTAAAGAGACEST: gi|208271581|gb|GE071835.1|GE071835
genomic: AACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAAgtatactact ... tgtaaaacagATGGGGTTGTCCTCCAAGCAAATTCCCGTGGACATATGAATCTAAAGAGAC
EST: AACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAA ATGGGGTTGTCCTCCAAGCAAATTCCCGTGGACATATGAATCTAAAGAGAC
genomic: AACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAAgtatactact ... tgtaaaacagATGGGGTTGTCCTCCAAGCAAATTCCCGTGGACATATGAATCTAAAGAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGAGTATGAGTAACGTGACAGAGAAATTGGGCATCAAGATTGAGAGGAACCCTCCTGAAGACAAGCTCACTCAACTTGGTGTTAGGCAATGGCCCAAgtatactacttcttttctttgccctcttcctctttttcttacttttgccctaaattttatatatacatttattgcttggtcttcttgagtattgtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc