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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTCCGGTGGTGAAGTCCGATCAGTTCGGCAAGGTGGGCCCCGCCTTCGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAGgttcattcttcaacctttttctctgtacccttcatttgcttcaatttcgcatagttgttaaatttttatgtaatggttctatgtcgattagtaaaaacaa...

Basic information

species Glycine max
transcript GLYMA16G33040.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33040.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g66320.1 (Oryza sativa), 5'ss of exon 1
AAGCTTCCGGTGGTGAAGTCCGATCAGTTCGGCAAGGTGGGCCCCGCCTTCGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAGgttcattcttcaacctttttctctgtacccttcatttgcttcaatttcgcatagttgttaaatttttatgtaatggttctatgtcg-attagtaaaaacaa
   || |||||||||| ||| ||   | |||||||| |||||||| | |||||||||||||||||||||||| ||||  || || | |||||  |||| |||         |  |    ||  |   |    |    ||| |   |||       | |        |  |  | ||||| |    |  || |  |      
GGCCTCCCGGTGGTGAGGTCGGAGGCGCTCGGCAAGCTGGGCCCCTCGTTCGGCATCGGCGCCGGCTGCGGCGTCGGCGTCTGCTTCGGCCTCATCGGCGgtaggcaagcgattcgccatccatagccatcacccgcgctcctccttcctcctcctctcgggcaccttcggtagggttcaacaaggtgttcgcgagggtt-

upper sequence: GLYMA16G33040.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g13880.1 (Oryza sativa), 5'ss of exon 1
AAGCTTCCGGTGGTGAAGTCCGATCAGTTCGGCAAGGTGGGCCCCGCCTTCGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAGgttcattcttcaacctttttctctgtacccttcatttgcttcaatttcgcatag---ttgttaaatttttatgtaatggttctatgtcgattagtaaaaacaa
| ||| |||| ||| |  |||    || |||||||| | ||||||||||||||| |||||| |||||||||| ||||   |||| | ||| |  |||| |||   ||||||  ||   |||||  |   |  ||   | |  ||| |  |||     | |||      | |    ||  |  |   |||  |  |    | | 
AGGCTCCCGGAGGTCACCTCCACCGAGCTCGGCAAGATCGGCCCCGCCTTCGGCCTCGGCGTCGGCTGCGGCGTCGGCGCCGGCGTCGGCTTCTTCGGCGgtaacttcttc--cccccttctcctttgtccccaaaaggtcgaatctttcatgtgtttcgttgttccatcagccgatattcttggctcgtgtgctgggtaga-

upper sequence: GLYMA16G33040.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G105184_T01 (Zea mays), 5'ss of exon 1
AAGCTTCCGGTGGTGAAGTCCGATCAGTTCGGCAAGGTGGGCCCCGCCTTCGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAGgttcattcttcaacctttttctctgtacccttcatttgcttcaatttcg--catagttgttaaatttttatgtaatggtt-ctatgtcgattagtaaaaacaa--
|  || || |||| || ||| |||  | |||||||  ||||||| ||||||||||||||||| ||||||||| | ||| | ||| | |||||  ||||||||   | |     ||||   |   ||   ||     |||| | | |  |       | |   | ||        | | || | |   ||   |     |      
AGCCTCCCCGTGGCGAGGTCGGATGCGCTCGGCAAACTGGGCCCTGCCTTCGGCATCGGCGCTGGCTGCGGCGTGGGTCTTGGCTTCGGCCTCATCGGAGgtgtgtac-----ccttcgccgacgtttactcttcctgctccgagtgtggcggccatagacgagttcacggagcacgattaccaaaccggcgaactggagtgctc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189064|gb|HO037467.1|HO037467
EST:     CGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAG                         GAGTGGGTTTTGGCCCTGGAATTCCTGGTTTCCAAGTTGGTTTTGGATTTG
genomic: CGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAGgttcattctt ... ttgactccagGAGTGGGTTTTGGCCCTGGAATTCCTGGTTTCCAAGTTGGTTTTGGATTTG
EST: gi|10235780|gb|BE804668.1|BE804668
EST:     CGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAG                         GAGTGGGTTATGGCCCTGGAATTCCTGGTTT
genomic: CGGCATCGGCGCCGGCTGCGGCCTCGGTTTCGGCCTTGGCCTTCTCGGAGgttcattctt ... ttgactccagGAGTGGGTTTTGGCCCTGGAATTCCTGGTTT