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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGATCACCCTCCTACGCGCCACCTCATCGTCTCATTCCCTCCCCAACACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttctctcttcgtcaacacacgtaatgggtctctcgaattttcttctgggtcatctcggattgctgaaagtttccatcttttttttttcttccgtttttttgcag

Basic information

species Glycine max
transcript GLYMA16G32900.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409668|gb|EV279476.1|EV279476
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|298173736|gb|HO017072.1|HO017072
EST:     ACCAATTGCCGTGTAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|21255639|gb|BQ452527.1|BQ452527
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|192294928|gb|FG987596.1|FG987596
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|213603660|gb|DB966802.1|DB966802
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|213596607|gb|DB958220.1|DB958220
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|298168134|gb|HO013397.1|HO013397
EST:     ACCAATTGCCGTGTAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|14990899|gb|BI316572.1|BI316572
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|10847829|gb|BF070447.1|BF070447
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|21255849|gb|BQ452737.1|BQ452737
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGGGTCGGTTAGCCGCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
EST: gi|22931782|gb|BU548921.1|BU548921
EST:     ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCC                         GAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA
genomic: ACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCgtaagcttct ... ttttttgcagGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAA