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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTTTGCTCTCTCCATCGTCGTTTTTGTCTCCTCCAGACTCAGTTCGTGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaagaaaattagatctgtttttctctgcaattttaccttttttttttatctgcttttgttcactcgatgtctttttttgggggggcttcatttt...

Basic information

species Glycine max
transcript GLYMA16G32650.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169498|gb|HO020858.1|HO020858
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTCATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|208321123|gb|GE118658.1|GE118658
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCCCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|16105813|gb|BI893553.1|BI893553
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|151407645|gb|EV277460.1|EV277460
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|17401661|gb|BM178443.1|BM178443
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|9901713|gb|BE610681.1|BE610681
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|209726268|gb|BW680205.1|BW680205
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACT
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACT
EST: gi|298174241|gb|HO017577.1|HO017577
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|298188640|gb|HO035333.1|HO035333
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|19348539|gb|BM893071.1|BM893071
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|23732340|gb|BU764330.1|BU764330
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|298190103|gb|HO032224.1|HO032224
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|298169753|gb|HO021113.1|HO021113
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|17022178|gb|BM093212.1|BM093212
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|298178403|gb|HO024138.1|HO024138
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: gi|298195413|gb|HO039244.1|HO039244
EST:     TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG                         GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTTTTTGCTCTCTCCATCGTCGTTTTTGTCTCCTCCAGACTCAGTTCGTGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaagaaaattagatctgtttttctctgcaattttaccttttttttttatctgcttttgttcactcgatgtctttttttgggggggcttcatttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg