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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGGAAAACTTGAAGTGCCTCTGGATAAGTGGTGGAGTTTGTTTGTTTGATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtatgtataatctgttggcttacttcattctatgtgtaacttcctcaatgatttaggaaagtatatgtcttcaatcaatcattcttaaagggtc...

Basic information

species Glycine max
transcript GLYMA16G31980.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700518|gb|BW660905.1|BW660905
EST:     ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG                         ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
EST: gi|209701623|gb|BW667364.1|BW667364
EST:     ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG                         ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
EST: gi|209719584|gb|BW672065.1|BW672065
EST:     ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG                         ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
EST: gi|208304394|gb|GE106575.1|GE106575
EST:     ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG                         ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAA
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAA
EST: gi|213605792|gb|DB968561.1|DB968561
EST:     ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG                         ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
EST: gi|120529845|gb|EH257979.1|EH257979
EST:     ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAG                         ATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA
genomic: ATTGATTTTGCAAATCAGTTGAATGGTAGGATCCCCAATCACCCAACAAGgtatttgtat ... aatttcttagATCAGGTGTGATTGAAGGAAAAAGGGGCATAGGGGAAGTTGAAGTGAAAAA