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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGTACCTCCTAGGATAAGGCTTTTTCTTCAGTACTTGCTCTTGGTGGAACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcctaactccctctttctcttccttgctccacttattctacttcactttcttaattccctgcgttttgaagcaccaccagtgttacattgctt...

Basic information

species Glycine max
transcript GLYMA16G31250.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407454|gb|EV277269.1|EV277269
EST:     AACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|192300606|gb|FG991528.1|FG991528
EST:     ACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: ACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|15589890|gb|BI674506.1|BI674506
EST:     AATGGCTTCCTCAGTTACTTCCTCTTTTCACATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|16279798|gb|BI943622.1|BI943622
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|151398682|gb|EV268553.1|EV268553
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|192311171|gb|FK004804.1|FK004804
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|192322865|gb|FK014796.1|FK014796
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|151402351|gb|EV272164.1|EV272164
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|192309811|gb|FK000263.1|FK000263
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|192317745|gb|FK010163.1|FK010163
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|120529031|gb|EH257165.1|EH257165
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|192311186|gb|FK004805.1|FK004805
EST:     AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: AACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
EST: gi|15589906|gb|BI674522.1|BI674522
EST:     CTCAGTTACTTCCTCTTTTCGCATCAG                         CAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG
genomic: CTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcc ... tctatttcagCAATTTGAAGTCGGTTTTTGTTGGTGAGACTAATAAACTCAGAGTTTCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGGTACCTCCTAGGATAAGGCTTTTTCTTCAGTACTTGCTCTTGGTGGAACAACCTTGTAACAATGGCTTCCTCAGTTACTTCCTCTTTTCGCATCAGgttaagctcctaactccctctttctcttccttgctccacttattctacttcactttcttaattccctgcgttttgaagcaccaccagtgttacattgctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccacc