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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGTGGACCTTCTTTCTCAGGCCATTCACCTCGAACCCAACAAAGCCGAACTCTACGCCGACCGAGCCCAAGCCAACATCAAACTCAACAACTTCACTGgtacaccatctctccctcccttgaaaaaagtttgtgtttttcgaatacccttttgcctgttctgtataaagcatcgggttttgcttgcgacggaatctgt...

Basic information

species Glycine max
transcript GLYMA16G29450.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29450.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0050g01510.t01 (Vitis vinifera), 5'ss of exon 1
GCCGTGGACCTTCTTTCTCAGGCCATTCACCTCGAACCCAACAAAGCCGAACTCTACGCCGACCGAGCCCAAGCCAACATCAAACTCAACAACTTCACTGgtacaccatctctccctcccttgaaaaaagttt--gtgtttttcgaatacccttttgcctgttctgtataaagcatcgggttttgcttgcgacggaatctgt
||||| |||||     ||||||||||  |  |  | || ||  | ||||| ||||| |  || ||| | || |||||||||||||||||||||||||||||||  | |||  || |||   ||       ||   |    |   | |||     ||    |||  || |         ||| |||  |  ||  || | |  
GCCGTTGACCTGTACACTCAGGCCATCGAAATAAACCCTAATCATGCCGAGCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGgtat-cgatcaatcactcttctgtttggctttccagaaagtccgggatatttaattttgcgtttcgtgttgttgtgttggtattggctttgattgatttta-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193455369|gb|FK419290.1|FK419290
EST:     ACTCTACGCCGACCGAGCCCAAGCCAACATCAAACTCTACAACTTCACTG                         AGGCTGCTGCTGATGCTAACAAAGCAATTGAATTGAATTCTTCTCTACCAA
genomic: ACTCTACGCCGACCGAGCCCAAGCCAACATCAAACTCAACAACTTCACTGgtacaccatc ... ttttgtgcagAGGCTGTTGCTGATGCTAACAAAGCAATTGAATTGAATTCTTCTCTACCAA
EST: gi|7145795|gb|AW507717.1|AW507717
EST:     ACTCTACGCCGACCGAGCCCAAGCCAACATCAAACTCAACAACTTCACTG                         AGGCTGTTGCTGATGCTAACAAAGCAATTGAATTGAATTCTTCTCTACCAA
genomic: ACTCTACGCCGACCGAGCCCAAGCCAACATCAAACTCAACAACTTCACTGgtacaccatc ... ttttgtgcagAGGCTGTTGCTGATGCTAACAAAGCAATTGAATTGAATTCTTCTCTACCAA