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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGCGGTGAAGGAGCCTTTGGATCTCATTAGGCTCAGCCTCGACGAGCGTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttcaatcttttttttttctccttttcatgaatttgtctgtttctttaagctttttttttactctttttgagacttccctttaacgcgtagggt...

Basic information

species Glycine max
transcript GLYMA16G28300.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28300.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g64690.1 (Oryza sativa), 5'ss of exon 1
GAGTGCGGTGAAGGAGCCTTTGGATCTCATTAGGCTCAGCCTCGACGAGCGTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttcaatcttttttttttctccttttcatgaatttgtctgtttctttaagctttttttttactcttt-ttgagacttccctttaacgcgtagggt---------
||  ||||||||||||||  ||||||| || |||||||||||||||||||| ||||| ||||| ||| | |||||| | ||||| || ||||| || || |||    |  || |  |  |  |||||||  |       |||| ||||  |  ||  |  |  ||| ||  |  |||   |||| || |   | | |             
GATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgta----tgtaaacgctcctgcttctcctccta------ttgtttgttcttcgaatttcgtgctttgcttgtggttggcccttctctgtggaggggaaatacggggaata

upper sequence: GLYMA16G28300.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G76860.1 (Arabidopsis thaliana), 5'ss of exon 1
GAGTGCGGTGAAGGAGCCTTTGGATCTCATTAGGCTCAGCCTCGACGAGCGTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttcaatcttttttttttctccttttcatgaatttgtctgtttctttaagctttttttttactctttttgagacttccctttaacgcgtagggt-----
     | |||| ||||||  | ||||| |||||||| || ||||||||| | ||||||||||| ||||| || ||| | || ||||| ||||| |||||||||  | |    |||| |    | ||   |  | |||| |||||   | ||| ||    |  ||  || | |  |  |  |    |||    | |    |     
AGCCACCGTGAGGGAGCCACTAGATCTGATTAGGCTGAGTCTCGACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAACTTCGCGGCAAGCTTCACgtacgttt----tcttgtgccctgcttagtaccttgaacttgtc-actacttaaaatactcgttccacacatagttcgtttgaattttgtaactttattttgccg

upper sequence: GLYMA16G28300.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0072g00710.t01 (Vitis vinifera), 5'ss of exon 1
GAGTGCGGTGAAGGAGCCTTTGGATCTCATTAGGCTCAGCCTCGACGAGCGTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttcaatcttttttttttctccttttcatgaatttgtctgtttctttaagctttt-----tttttactctttttgagacttccctttaacgcgtagggt
||| || ||||||||||| ||||||||||| || || |||||||||||||||||||| ||||| ||||| |||||| | || || || ||||||||||| ||| || |    | | | | | || |  ||||  |   | |   | |   ||||| |||||     |||||  | |  || | | |||  ||       |     
GAGCGCAGTGAAGGAGCCGTTGGATCTCATAAGACTTAGCCTCGACGAGCGTATCTACGTCAAGCTCCGCTCCGACCGTGAACTCCGAGGCAAACTTCATgtatttttctcctttctctctctttttttttttttccttctacatatgcgtttaaccttttcaacgttttttttttcctttaaatttcttttcctgttat-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409537|gb|EV279345.1|EV279345
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298184281|gb|HO029494.1|HO029494
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|193435555|gb|FK400727.1|FK400727
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATNTGATTCTTGGNGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|8286069|gb|BE023628.1|BE023628
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|207828756|gb|GD798445.1|GD798445
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298180451|gb|HO022004.1|HO022004
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|192333290|gb|FK026171.1|FK026171
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298174518|gb|HO017741.1|HO017741
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|24206304|gb|BU965557.1|BU965557
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|193352177|gb|FK315523.1|FK315523
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298164591|gb|HO014236.1|HO014236
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|208206321|gb|GE007516.1|GE007516
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGA
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGA
EST: gi|151410083|gb|EV279891.1|EV279891
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298163866|gb|HO012599.1|HO012599
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|18041190|gb|BM309484.1|BM309484
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298185779|gb|HO028090.1|HO028090
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298182715|gb|HO031450.1|HO031450
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAGACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298188300|gb|HO034993.1|HO034993
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|22928407|gb|BU545546.1|BU545546
EST:     GTANNNATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298178093|gb|HO027476.1|HO027476
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|151406886|gb|EV276701.1|EV276701
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|151406776|gb|EV276591.1|EV276591
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|208035160|gb|GD836400.1|GD836400
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTA
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTA
EST: gi|192333289|gb|FK026170.1|FK026170
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|19271241|gb|BM887497.1|BM887497
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGTTGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298174185|gb|HO017521.1|HO017521
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298167122|gb|HO010561.1|HO010561
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|151394792|gb|EV264663.1|EV264663
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|151395130|gb|EV265001.1|EV265001
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCGC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298175596|gb|HO015115.1|HO015115
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|208278344|gb|GE076191.1|GE076191
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|193313199|gb|FK279154.1|FK279154
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|192327363|gb|FK019580.1|FK019580
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|192327791|gb|FK022070.1|FK022070
EST:     TCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: TCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298186503|gb|HO037136.1|HO037136
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|192327790|gb|FK022069.1|FK022069
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|193384543|gb|FK350661.1|FK350661
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTTCTTGGTGATGTTGAAGAAATTGT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATT-CTTGGTGATGTTGAAGAAATTGT
EST: gi|298171111|gb|HO016143.1|HO016143
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298186178|gb|HO036811.1|HO036811
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298186274|gb|HO036907.1|HO036907
EST:     GTATCTATGTCAAGCTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|208288422|gb|GE086129.1|GE086129
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|193379704|gb|FK344506.1|FK344506
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|193589768|gb|FK544684.1|FK544684
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCGC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298199208|gb|HO042571.1|HO042571
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|193371715|gb|FK333770.1|FK333770
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATT
EST: gi|193692800|gb|FK627121.1|FK627121
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGNGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|31469628|gb|CD411656.1|CD411656
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCCAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298170134|gb|HO018758.1|HO018758
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|193330777|gb|FK293707.1|FK293707
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTTCTTGGTGATGTTGAAGAAATCGT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATT-CTTGGTGATGTTGAAGAAATTGT
EST: gi|208329586|gb|GE127163.1|GE127163
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAAGATGATTCTTGGTGA
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGA
EST: gi|193728772|gb|FK667736.1|FK667736
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAT                         GCTTATGATCAGCATCTTAATATGA
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGA
EST: gi|193438431|gb|FK401806.1|FK401806
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298164448|gb|HO014093.1|HO014093
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|298196577|gb|HO041320.1|HO041320
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
EST: gi|19271075|gb|BM887331.1|BM887331
EST:     GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCAC                         GCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT
genomic: GTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttc ... gaatttgcagGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGTGCGGTGAAGGAGCCTTTGGATCTCATTAGGCTCAGCCTCGACGAGCGTATCTATGTCAAACTCCGTTCCGACAGAGAGCTTCGTGGCAAACTTCACgtaattcttcaatcttttttttttctccttttcatgaatttgtctgtttctttaagctttttttttactctttttgagacttccctttaacgcgtagggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT