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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTGGGCAACCCAAGCCTGATCCATGCACAAAGCATTCTTGCCATCTGGGCCACCCAAGTTATCTTGATGGGTGCAGTTGAGGGTTACCGTATTGCTGgtgggcctcttggtgaggtgactgatccaatctatccaggtggcagctttgacccattgggtcttgctgatgacccagaggcttttgctgag

Basic information

species Glycine max
transcript GLYMA16G27990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27990.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S169_127V6.1 (Physcomitrella patens), 5'ss of exon 1
TACTTGGGCAACCCAAGCCTGATCCATGCACAAAGCATTCTTGCCATCTGGGCCACCCAAGTTATCTTGATGGGTGCAGTTGAGGGTTACCGTATTGCTGgtgggcctcttggtgaggtgactgatccaatctatccaggtggcagctttgacccattgggtcttgctgatgacccagaggcttttgctgag------------------------------------------------------------------
                                                                     ||||| || || |||   |||||| |||||||||| ||| | ||||||||||| |||||||| || |||||||||   ||  | || ||   | | ||  |||| |  ||   | | ||||||                                                                  
---------------------------------------------------------------------ATGGGAGCCGTCGAGAAGTACCGTGTTGCTGGTGGACCTTTGGGTGAGGTGACCGATCCAATTTACCCAGGTGGCTCTTTCCATCCCTTATATTTAgccaatgatctcgaca-tctcgctgagttgaaggtgaaggagatcaagaacggttgtttgacaatgtattccacgttcggattctttgttcag