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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGGATTATAAGGAAGCATCTTGAGGATGTCTTCGAGAAGGACAGTGGAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATgtaagactacttgagacaatttcccaaaccctaactcccatctttatttcttattctcaaccttaacttccaatgctgtgattgacacttcaatcaatta...

Basic information

species Glycine max
transcript GLYMA16G27900.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283268|gb|BE020829.1|BE020829
EST:     GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAAT                         GGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
genomic: GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATgtaagactac ... ctgcaaacagGGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
EST: gi|6071932|gb|AW101319.1|AW101319
EST:     GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAAT                         GGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
genomic: GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATgtaagactac ... ctgcaaacagGGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
EST: gi|8285695|gb|BE023254.1|BE023254
EST:     GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAAT                         GGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
genomic: GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATgtaagactac ... ctgcaaacagGGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
EST: gi|4396950|gb|AI495947.1|AI495947
EST:     GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAAT                         GGATGCGATGCGTCTATATTGNTGAATGGAGACGGT
genomic: GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATgtaagactac ... ctgcaaacagGGATGCGATGCGTCTATATTGTTGAATGGAGACGGT
EST: gi|7925851|gb|AW831877.1|AW831877
EST:     GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAAT                         GGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
genomic: GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATgtaagactac ... ctgcaaacagGGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
EST: gi|12774112|gb|BG239039.1|BG239039
EST:     GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAAT                         GGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
genomic: GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATgtaagactac ... ctgcaaacagGGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
EST: gi|6566698|gb|AW234332.1|AW234332
EST:     GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAAT                         GGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC
genomic: GAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATgtaagactac ... ctgcaaacagGGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACAC