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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTCCATTGTGAGGAAACATCTCAAGAAGGTGTTCAAGGATGACAATGGCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaattttttttttatcgaaaaatgttaattgttagaattataatttattaataaaagagatcaaattcactacttttcttacctttccttaatcatcta...

Basic information

species Glycine max
transcript GLYMA16G27880.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700816|gb|BW683072.1|BW683072
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|37995135|gb|CF806724.1|CF806724
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|213594657|gb|DB959796.1|DB959796
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|33390085|gb|CA853292.1|CA853292
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|37994902|gb|CF806491.1|CF806491
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|209713868|gb|BW684061.1|BW684061
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|21256701|gb|BQ453589.1|BQ453589
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|254318310|gb|GR832478.1|GR832478
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|151399481|gb|EV269352.1|EV269352
EST:     GCCAAGCTCCTGCCTTACTCCGCATCTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|8285590|gb|BE023149.1|BE023149
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|254341011|gb|GR854739.1|GR854739
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|4397353|gb|AI496350.1|AI496350
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|192299907|gb|FG991781.1|FG991781
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|37995063|gb|CF806652.1|CF806652
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|16347652|gb|BI973247.1|BI973247
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|23728490|gb|BU762300.1|BU762300
EST:     GCCAAGCTCCTGTCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|254341380|gb|GR855108.1|GR855108
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|254338193|gb|GR845549.1|GR845549
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|37995893|gb|CF807482.1|CF807482
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
EST: gi|213612248|gb|DB956901.1|DB956901
EST:     GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAG                         GGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA
genomic: GCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaatttttt ... atttgtatagGGATGTGATGGATCATTGCTGCTAGATGGGAGTCCAAGTGAAAGAGACCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGTCCATTGTGAGGAAACATCTCAAGAAGGTGTTCAAGGATGACAATGGCCAAGCTCCTGCCTTACTCCGCATTTTCTTCCATGATTGTTTTGTTCAGgtaattttttttttatcgaaaaatgttaattgttagaattataatttattaataaaagagatcaaattcactacttttcttacctttccttaatcatcta

- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc