Sequence
atgc intronic sequence ATGC exonic sequenceCTAAGGAGTTGCAGGAATACTTCAAACAGAAGAAGCTTGAACAAGCAGATCAGGGTCCTTTCTTTGGTTTCATCGGGAAAAATGAGATTAGCAATGGAAGgtaaaagttttgctattggaatagtataaaattagagatactctttaggtggggtttatgttaattgcattttctttatgatggtacaattggttaattg...
Basic information
species | Glycine max |
transcript | GLYMA16G27850.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G27850.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g40710.1 (Oryza sativa), 5'ss of exon 1
CTAAGGAGTTGCAGGAATACTTCAAACAGAAGAAGCTTGAACAAGCAGATCAGGGTCCTTTCTTTGGTTTCATCGGGAAAAATGAGATTAGCAATGGAAGgtaaaa--gttttgctattggaatagtataaaattagagatactctttaggtggggtttatgttaattgcattttctttatgatggt--acaattggttaattg
| ||||| ||||||| |||||||| ||||||||||| || | || || |||||||| |||||||| ||| | || || ||||||||| |||||||||||| | |||| | | | || | | | | || || | | ||| ||| ||||| || |||| | ||
CCAAGGATCTGCAGGATTACTTCAAGCAGAAGAAGCTGGACGAGGCTGACCAGGGTCCCTTCTTTGGGTTCTTGGGCAAGAATGAGATTTCCAATGGAAGgtacgtttgccctgctccccccctgaaaagattcaggaacaaatttgtcaatgaaaaaaattct--cttgattatctgcatgattgttagaaattaggcgat--
upper sequence: GLYMA16G27850.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0072g00120.t01 (Vitis vinifera), 5'ss of exon 1
CTAAGGAGTTGCAGGAATACTTCAAACAGAAGAAGCTTGAACAAGCAGATCAGGGTCCTTTCTTTGGTTTCATCGGGAAAAATGAGATTAGCAATGGAAGgta---aaagttttgctattggaatagtataaaattagagatactctttaggtggggtttatgttaattgcattttctttatgatggtacaattggttaattg
|||||||| | ||||| || ||||| |||| ||||||||| | || ||||||||||||||||||| ||||| || || ||||||||| |||||||||||| | ||||| || | || | | | ||| || | || || | || || |||| || | | | | ||||
CTAAGGAGCTTCAGGATTATTTCAAGCAGAGGAAGCTTGAGGAGGCCAATCAGGGTCCTTTCTTTGGCTTCATTGGCAAGAATGAGATTTCCAATGGAAGgtacatgatgtttttctttctctattttgtcagattttgaat-tttttcagctttgggtttcaagaatttggccaatttgactgacccatatgagtataat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10253060|gb|BE820826.1|BE820826EST: CAGGGTCCTTTCTTTGGTTTCATCGGGAAAAATGAGATTAGCAATGGAAG ATGGGCAATGTTTGGTTTTGCTGTAGGGTTGCTAACAGAGTATGCAACAGG
genomic: CAGGGTCCTTTCTTTGGTTTCATCGGGAAAAATGAGATTAGCAATGGAAGgtaaaagttt ... atttctacagATGGGCAATGTTTGGTTTTGCTGTAGGGTTGCTAACAGAGTATGCAACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTAAGGAGTTGCAGGAATACTTCAAACAGAAGAAGCTTGAACAAGCAGATCAGGGTCCTTTCTTTGGTTTCATCGGGAAAAATGAGATTAGCAATGGAAGgtaaaagttttgctattggaatagtataaaattagagatactctttaggtggggtttatgttaattgcattttctttatgatggtacaattggttaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgggg