Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattccttattcaatttcttaatgacatttctgttattggtatactgagtcttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag

Basic information

species Glycine max
transcript GLYMA16G27820.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 2
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattccttattcaatttcttaatgacatttctgttattggtatactgagtcttttcc-caggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgt-ctattactgcttgcggccacaacatta-acag
|| |   ||||||| |  |||||||||||||| ||||| ||||| ||||| |||||||| || ||||| || || ||||||||  |||| || |||||||||||   | |  |  |||| || | |     ||   || |    |      | ||| ||| || ||  |||       ||  |     |  |   |  || |      | |   | |  |  ||||| ||| |  ||  | |          ||   |||
GCAGTGCTGGATGCTGGAGCATGGATGTTCAACGTTGTGACATCAGTTGGTATCATCATGGTCAACAAGGCATTAATGGCCACACATGGTTTTAGTTTTGgtaaga-catgctataattcctcactcgtggttgaattgtcaaga----atgccttgtccgcacgtcttatggatagttggactaaaccgaactatcgttgtgcagcaaaccagtcagattttttgtgctaatgatgtgttccattgtgtgtttgtgcag

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 2
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattccttattcaatttcttaatgacatttctgttattggtatactgagtcttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag
|| ||  | ||||| |  || |||||||||||  |||| ||||||||||| |||||||| || ||||| || || ||||| ||  |||| || ||||||||||   |        || ||  |||||   | |   ||| |  |||      ||  ||    || |  ||       | | ||  ||| | |  | |     |  || |  |  ||| ||      ||||| ||   | | |               
GCAGCATTAGATGCTGGAGCTTGGATGTTCAACATTGTGACATCTGTTGGTATCATCATGGTCAACAAGGCCTTAATGGCTACACATGGTTTTAGTTTTGgtacgat--------aaattgataatgctttattatttactcatatgtgtgatcactt----ggaaagatgaatctgtaa-caaactcagctactgaacacatgcttgtact--aatatgggggtgctattgct-tgtacag---------------

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaa----attccttattcaatttcttaatgacatttctgttattggtatac---tgagtcttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag
|| ||  | ||||| |  ||||||||||||||||| || ||||||||||| |||||||| || |||||||  || ||||| ||| ||||||| |||||||||||    || ||  ||     ||| |||   |||  |  |   || |  ||    |  |  ||| | |  ||  |    |  |  ||  |||    |  || | | |  ||   |||| |  |   ||||||  | |||   ||||  | |||          
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatg-cgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgctt--gtcttgtgcta--atttgttcactaccttttgctcctacag---------

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattccttattcaatttcttaatgacatttctgt-tattggtatactgagtcttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag-------------------------------------
|| ||  | || || |  ||||||||||||||||| || ||||| ||||| |||||||| || |||||||| || ||||| ||  |||| || ||||| |||||   || |   |||  | |   |   ||  | |  ||   |||   ||  |  ||  || |   || | || |  ||   |       |     |||||  |   | |    | | | |||   ||||  |||      |   ||   | | |                                       
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaaga-ccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgc--gtctttgtttctgtctaaaactaaactacgattttgctgagaacc---agtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaat-tccttattcaatttcttaatgacatttctgttattggtatactgagtc--ttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag
||  |  | ||||| ||||| |||||||||||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||||||||| || |||||||  | | |||  ||||   |||| | ||| |  | |  |     || |       | ||  ||  |   ||                                                                                       
GCAACATTAGATGCTGCTGCTTGGATGTTCAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTATGGCTTTAGCTTTGgtacttcttcttcatcaaaaccttatttacaatcatatcttcaaattatttgtctaatattttcaatttcaatgcag-----------------------------------------------------------------------------------

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattccttattcaatttcttaatgacatttctgttattggtatactgagtc-ttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag
|| ||  | ||||| ||||| |||||||||||||| || || |||||||| ||||||||||| || |||||||| ||||| |||||||| |  || |||||||||    |   |     ||||| | |      | |  |||  |     ||   || | | |  | || ||      | |||||| |                                                                      
GCAGCCGTAGATGCTGCTGCGTGGATGTTCAATGTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTATAGCTTTGgtaaagatttctcttttgctcttacttaagacgttttctttgaaacctgtagctattcttctaatttgtttac-----ttatcatgttgcag------------------------------------------------------------------

upper sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 1
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattccttattcaatttcttaatgacatttctgttattggtatactgagtcttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag
|| ||  | |||||||| |||||||||||||||||||| || |||||||| || ||| |||| |||||||| || ||||| || ||||| |||||||||||||| |   || |  | |   ||   |   ||||| | |||  | |  |  | || |    |  |  || |||        ||||    |||  |  |   || || |                                                 
GCAGCACTAGATGCAGCCGCATGGATGTTCAATGTTGTCACTTCTGTTGGGATTATCCTTGTCAACAAAGCATTAATGGCTACATATGGATTCAGTTTTGgtaattcttttctaaagtaaatttgcgttttttctttgattaatttcttttgcctgtgtatattttttacatg--------catgtgtggataattctcacttcttaa-------------------------------------------------