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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTTTTTCGTTTCTTCTTTCGCAAACCTAATTACTGCTATTACGAGACGACGCAGgtaattttccatttccttttctcgggaaaattaaacagatttaaacaaatccagaatacactgaaactgcagcacttttcattttgttctcgttcttctt...

Basic information

species Glycine max
transcript GLYMA16G27210.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208154041|gb|GD956158.1|GD956158
EST:     CGCAAACCTAATTACTGCTATTACGAGACGACGCAG                         ATTTAGTTCGGATTGTTCGATTGCGATGGCTAGGAAGATGCTTATCGATGG
genomic: CGCAAACCTAATTACTGCTATTACGAGACGACGCAGgtaattttcc ... gatgatttagATTTAGTTCGGATTGTTCGATTGCGATGGCTAGGAAGATGCTTATCGATGG
EST: gi|193532030|gb|FK488896.1|FK488896
EST:     CAAACCTAATTACTGCTATTACGAGACGACGCAG                         ATTTAGTTCGGATTGTTCGATTGCGATGGCTAGGAAGATGCTTATCGATGG
genomic: CAAACCTAATTACTGCTATTACGAGACGACGCAGgtaattttcc ... gatgatttagATTTAGTTCGGATTGTTCGATTGCGATGGCTAGGAAGATGCTTATCGATGG
EST: gi|208222777|gb|GE021222.1|GE021222
EST:     AAACCTTAATTTACTTGCTTATTACGAGACGACGCAG                         ATTTAGTTCGGATTGTTCGATTGCGATGGCTAGGAAGATGCTTATCGATGG
genomic: AAACC-TAA-TTAC-TGC-TATTACGAGACGACGCAGgtaattttcc ... gatgatttagATTTAGTTCGGATTGTTCGATTGCGATGGCTAGGAAGATGCTTATCGATGG
EST: gi|151394106|gb|EV263977.1|EV263977
EST:     CGTTTCTTCTTTCGCAAACCTAATTACTGCTATTACGAGACGACGCAG                         ATTTAGTTCGGATTGTTCGATTGCGATGGCTAGGAAGATGCTTATCGATGG
genomic: CGTTTCTTCTTTCGCAAACCTAATTACTGCTATTACGAGACGACGCAGgtaattttcc ... gatgatttagATTTAGTTCGGATTGTTCGATTGCGATGGCTAGGAAGATGCTTATCGATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTTTTTTCGTTTCTTCTTTCGCAAACCTAATTACTGCTATTACGAGACGACGCAGgtaattttccatttccttttctcgggaaaattaaacagatttaaacaaatccagaatacactgaaactgcagcacttttcattttgttctcgttcttctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa