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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGTTTGAGAATCAGCACTGTGTCACGATGTCCAATCATCACCGTTCTTCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttttttctttttattttctcgcttctctgttttgtttcccagaaaaatatgtaggaaattagggcagtgaaagttacggagccttatagcttc...

Basic information

species Glycine max
transcript GLYMA16G27200.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716318|gb|BW657464.1|BW657464
EST:     TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG                         CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: gi|151410336|gb|EV280151.1|EV280151
EST:     TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG                         CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: gi|193663793|gb|FK612421.1|FK612421
EST:     TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG                         CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: gi|151409239|gb|EV279047.1|EV279047
EST:     TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG                         CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: gi|151410478|gb|EV280293.1|EV280293
EST:     TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCCCTGCAG                         CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: gi|208251373|gb|GE049684.1|GE049684
EST:     TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG                         CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
EST: gi|208339211|gb|GE138917.1|GE138917
EST:     TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAG                         CCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT
genomic: TCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttt ... tatattgcagCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGGGTTTGAGAATCAGCACTGTGTCACGATGTCCAATCATCACCGTTCTTCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGgtctctcttttttctttttattttctcgcttctctgttttgtttcccagaaaaatatgtaggaaattagggcagtgaaagttacggagccttatagcttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG