1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTGGGGGTGATGTGTGTGGTGGAGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttcacttttcaatctctaagacacccttttgtaaatacccatgatttgtttgcaaattttggtttcttattctgaaaattgtgaatttttgtatccaatgtag
species | Glycine max |
transcript | GLYMA16G27140.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|4285566|gb|AI440922.1|AI440922
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: TGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|21677365|gb|BQ629716.1|BQ629716
genomic: TGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|193708830|gb|FK648568.1|FK648568
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|193671934|gb|FK614608.1|FK614608
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|10237489|gb|BE806377.1|BE806377
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|209729770|gb|BW658575.1|BW658575
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|19935893|gb|BQ080631.1|BQ080631
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGEST: gi|21602802|gb|BQ613133.1|BQ613133
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAG GGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttc ... tccaatgtagGGGGTCACATAAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGGGGTGATGTGTGTGGTGGAGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATTCTGGTGTACTGCACTGCTGGAATCTCAGgtgccttttcacttttcaatctctaagacacccttttgtaaatacccatgatttgtttgcaaattttggtttcttattctgaaaattgtgaatttttgtatccaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA