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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGCCCATGTGGATTGAGTTGCTTGTGGACAAAATCACTGGTTCTTGCTGACAACCCTGATGCCTTCTTGTTTGAAACGACTAAACCTCCGGCACAAgtaacaatttttttgggttatgatgtttacacttattgttttttattatgtgttgtgtggatgataaagtttagctatatattttatgttattaagtgaa...

Basic information

species Glycine max
transcript GLYMA16G27090.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27090.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0075g00120.t01 (Vitis vinifera), 5'ss of exon 1
CATTTGCCCATGTGGATTGAGTTGCTTGTGGACAAAATCACTGGTTCTTGCTGACAACCCTGATGCCTTCTTGTTTGAAACGACTAAACCTCCGGCACAAgtaa----caatttttttgggtta-tgatgt-ttacacttattgtttt-ttattatgtgttgtgtggatgata-aagtttagctatat-attttatgttattaagtgaa
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CTCATGCCGATGTGGGTTGAGCTGTTTGTGGACCAAGTCTTCGGTTCTTGCTGACAAGCCTGATGCTTTGTTGTTTGAGACCACCACTCCTCCACTTCAGgtgcttctcatattttttagctcaatgctctgtttttcttgttctttcattattattttttctggaagtgtgagaaatttgtccatctcattacacatcc---------