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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAGATGGAAGCTGCAAAGGGAACCGTCAAAGGTGTGGCTATCATCATCGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctctctctgagtgagtgtgtttattcagttaggaatgttttgttgcttattggtgtttcattgtgattattgtgtag

Basic information

species Glycine max
transcript GLYMA16G27020.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23058846|gb|BU578339.1|BU578339
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAACACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|31470014|gb|CD412042.1|CD412042
EST:     GGAGACAACAACATTAGAGGCTCTCTTCAGGTTCTTCAGCACCCCAATG                         GGACCACCCATGCGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: GGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|31470725|gb|CD412753.1|CD412753
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|7146773|gb|AW508695.1|AW508695
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|209702151|gb|BW677951.1|BW677951
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|192334422|gb|FK024115.1|FK024115
EST:     CGGAGACGACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|31472202|gb|CD414230.1|CD414230
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|209702150|gb|BW677950.1|BW677950
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|298171130|gb|HO016162.1|HO016162
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|10255867|gb|BE823633.1|BE823633
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|298197096|gb|HO041839.1|HO041839
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
EST: gi|15200962|gb|BI424621.1|BI424621
EST:     CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATG                         GGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG
genomic: CGGAGACAACAACATTAGAGGCTCTCTTCAGTTTCTTCAGCACCCCAATGgtttctctct ... tattgtgtagGGACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATG