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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAGCAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctctctctctctctcacacacacacacacacacttctattttcatttcatcaccactcaatcgctcaaacacttccaacaattattagtattgc...

Basic information

species Glycine max
transcript GLYMA16G27010.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402667|gb|EV272480.1|EV272480
EST:     TCGAAGAACGACAAGCTTGTGAACTCATAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|8283787|gb|BE021346.1|BE021346
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|298169920|gb|HO018544.1|HO018544
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|209710160|gb|BW681072.1|BW681072
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACACGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|37997491|gb|CF809080.1|CF809080
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACACGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|58021292|gb|CX708033.1|CX708033
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|192299481|gb|FG990790.1|FG990790
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|298175937|gb|HO015342.1|HO015342
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|298187572|gb|HO034721.1|HO034721
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|298171093|gb|HO016125.1|HO016125
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|151394261|gb|EV264132.1|EV264132
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|193547664|gb|FK504609.1|FK504609
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACG
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACG
EST: gi|298180018|gb|HO025233.1|HO025233
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGA-CACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|7478427|gb|AW666261.1|AW666261
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|208089933|gb|GD890806.1|GD890806
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|192295554|gb|FG988128.1|FG988128
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|14991741|gb|BI317414.1|BI317414
EST:     AGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGTAGTTCGAAATCAA
genomic: AGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|17022976|gb|BM094010.1|BM094010
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAATTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|192305689|gb|FG998039.1|FG998039
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|207799466|gb|GD769669.1|GD769669
EST:     AGCCGGTCTTCACCCCCTACAAAGA                         CACAAGTTTGTCTTC
genomic: AGCCGGTCTTCACCCCCT-CAA-G-gttcctctct ... ctgtgagcagCACAAGTTTGTCTTC
EST: gi|207799466|gb|GD769669.1|GD769669
EST:     AGCCGGTCTTCACCCCCTACAAAGA                         CACAAGTTTGTCTTC
genomic: AGCCGGTCTTCACCCCCT-CAA-G-gttcctctct ... ctgtgagcagCACAAGTTTGTCTTC
EST: gi|298193673|gb|HO040321.1|HO040321
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|37995997|gb|CF807586.1|CF807586
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACACGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|19269428|gb|BM885684.1|BM885684
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|58020447|gb|CX707189.1|CX707189
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTTTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|21677127|gb|BQ629478.1|BQ629478
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|58017961|gb|CX704703.1|CX704703
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|298166699|gb|HO010138.1|HO010138
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|19346443|gb|BM891323.1|BM891323
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|13789026|gb|BG651617.1|BG651617
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|4397610|gb|AI496607.1|AI496607
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|57575959|gb|CX548930.1|CX548930
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|254329998|gb|GR839551.1|GR839551
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|192326201|gb|FK016288.1|FK016288
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAGGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|213611709|gb|DB960637.1|DB960637
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACACGCCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA
EST: gi|151413065|gb|EV282873.1|EV282873
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAG                         CACAAGTTTGTCTTCTGGTACACGCGCCGAACACCCGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctct ... ctgtgagcagCACAAGTTTGTCTTCTGGTACACGCGCCGAACACCTGGAGTTCGAAATCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAGCAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTCAAGgttcctctctctctctctctcacacacacacacacacacttctattttcatttcatcaccactcaatcgctcaaacacttccaacaattattagtattgc

- - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc