Sequence
atgc intronic sequence ATGC exonic sequenceATCACTTGTTACCTCACAGAGAAAGTCCTCAATAGAGCCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGATTTGCCCAgtaagtactttgatcattttctttttattttgacttttgtttttgtttttatctcaatttgatgataattggtattgttgttaattaattatttgttaattaccattaatcatctttcattgtcaccttgcgagtggttaattattattcattgatctgaatttgttattttttatgggtatgtgtgtgtag
Basic information
species | Glycine max |
transcript | GLYMA16G26810.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G26810.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g07640.t01 (Vitis vinifera), 5'ss of exon 1
ATCACTTGTTACCTCACAGAGAAAGTCCTCAATAGAGCCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGATTTGCCCAgtaagtactttgatcattttctttttattttgacttttgtttttgtttttatctcaatttgatgataattggtattgttgttaattaattatttgttaattaccattaatcatctttcattgtcaccttgcgagtggttaattattattcattgatctgaatttgttattttttatgggtatgtgtgtgtag
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ATATCTTATTATCTCACGGAGAGGGTGATGAATAGTAGCTTCAGTGCAAGAGCTATTGGAGAAGTTGACCTTAACAAGTGTGAACCCTGGGATTTACCTAgtaatctctctctctatctttct----ctgtgagttct---ttggttttt---tggatttggt----atttggggcgttattt-ctaatcttttattggacttgattgtacag-------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15203882|gb|BI426650.1|BI426650EST: GCTGATTTCAACAAGTGTGAGCCTTGGGATTTGCCCA AGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATA
genomic: GCTGATTTCAACAAGTGTGAGCCTTGGGATTTGCCCAgtaagtactt ... gtgtgtgtagAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCACTTGTTACCTCACAGAGAAAGTCCTCAATAGAGCCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGATTTGCCCAgtaagtactttgatcattttctttttattttgacttttgtttttgtttttatctcaatttgatgataattggtattgttgttaattaattatttgttaattaccattaatcatctttcattgtcaccttgcgagtggttaattattattcattgatctgaatttgttattttttatgggtatgtgtgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT