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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAGAACCGCGCCTTACAATGCGCACGTCTTCACTTGGAATCTATGCCACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaatttactttctctctcttcttttttttttgtcttttgagccaattttctttttccaaaatctgttttggggtctgatctttggcacatata...

Basic information

species Glycine max
transcript GLYMA16G26790.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454146|gb|AW184894.1|AW184894
EST:     CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAG                         GAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
genomic: CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaa ... actcttacagGAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
EST: gi|6455693|gb|AW186376.1|AW186376
EST:     CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAG                         GAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
genomic: CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaa ... actcttacagGAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
EST: gi|298166224|gb|HO009195.1|HO009195
EST:     CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAG                         GAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
genomic: CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaa ... actcttacagGAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
EST: gi|13312100|gb|BG405751.1|BG405751
EST:     CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAG                         GAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
genomic: CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaa ... actcttacagGAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
EST: gi|298194715|gb|HO043187.1|HO043187
EST:     CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAG                         GAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
genomic: CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaa ... actcttacagGAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
EST: gi|298165641|gb|HO011690.1|HO011690
EST:     CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAG                         GAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
genomic: CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaa ... actcttacagGAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
EST: gi|298190386|gb|HO032507.1|HO032507
EST:     CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAG                         GAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
genomic: CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaa ... actcttacagGAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
EST: gi|9987355|gb|BE661463.1|BE661463
EST:     CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAG                         GAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC
genomic: CACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaa ... actcttacagGAATTTGATTCTTCGTATGGTCCAGCTTGGCACTGCATTGTGGGTACTAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCAGAACCGCGCCTTACAATGCGCACGTCTTCACTTGGAATCTATGCCACCTGGCAACAAGCTTGACAACAAACGCCTTGCACTGGCCCTTAAGAAGgttacattaatttactttctctctcttcttttttttttgtcttttgagccaattttctttttccaaaatctgttttggggtctgatctttggcacatata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggggt