Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCCATTTGGCAGAACTATGTGCCTACCTGGGCCTTTGATCACATCAAATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaactataatatgtatgctaatatgcaatgatctatatgcagtaaatacaactttggttataaaattattcattatactcatgcaattttgagcag

Basic information

species Glycine max
transcript GLYMA16G26630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181242|gb|HO022681.1|HO022681
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|26057164|gb|CA800078.1|CA800078
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCCTGATAAATACACTG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|26057309|gb|CA800223.1|CA800223
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|26047926|gb|CA784566.1|CA784566
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|209697680|gb|BW655581.1|BW655581
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|213608142|gb|DB963044.1|DB963044
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|10710011|gb|BF009735.1|BF009735
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|21257114|gb|BQ454002.1|BQ454002
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|8826632|gb|BE210362.1|BE210362
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|21677422|gb|BQ629773.1|BQ629773
EST:     GGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: GGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|26047909|gb|CA784550.1|CA784550
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGCCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|192325208|gb|FK019109.1|FK019109
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|192300515|gb|FG991497.1|FG991497
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|37995899|gb|CF807488.1|CF807488
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|151410958|gb|EV280773.1|EV280773
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|15815678|gb|BI787953.1|BI787953
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|12688333|gb|BG154669.1|BG154669
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|14125481|gb|BG789919.1|BG789919
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|298197960|gb|HO039499.1|HO039499
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTCCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|10237640|gb|BE806528.1|BE806528
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACTG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|9204019|gb|BE330243.1|BE330243
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|7925629|gb|AW831655.1|AW831655
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
EST: gi|298174405|gb|HO014550.1|HO014550
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAG                         GTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCAAAAGGGTCCTACTTGTTTGGTCACTTCAGCATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGCCATTTGGCAGAACTATGTGCCTACCTGGGCCTTTGATCACATCAAATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAATACACAGgtatgtaactataatatgtatgctaatatgcaatgatctatatgcagtaaatacaactttggttataaaattattcattatactcatgcaattttgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT