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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGAGGTTGAAGAAGCAAGCACCAACGTGAATACCCTAATTCGGAGGGTTTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtcccttactcaaaaccctttttcatagtaaatctgaaacctcatgcattggattcaaatccgtaagatggaaccatctgttttcgatttgcaat...

Basic information

species Glycine max
transcript GLYMA16G26600.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193695102|gb|FK631268.1|FK631268
EST:     TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|8283523|gb|BE021082.1|BE021082
EST:     TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|18040129|gb|BM308423.1|BM308423
EST:     GTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: GTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|208026699|gb|GD826749.1|GD826749
EST:     TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|13125768|gb|BG316338.1|BG316338
EST:     TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|193597931|gb|FK549253.1|FK549253
EST:     TCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|8283475|gb|BE021034.1|BE021034
EST:     TTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|213591320|gb|DB973809.1|DB973809
EST:     TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|208250832|gb|GE047799.1|GE047799
EST:     TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|151408431|gb|EV278239.1|EV278239
EST:     TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
EST: gi|193311561|gb|FK277277.1|FK277277
EST:     TTCGGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAG                         GCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA
genomic: TTCAGTTTTCGCCCTCTTTTCTCATCTCCAACATCTTCGTCGTCACGGAGgtacggtccc ... tgttttatagGCTAGTCTTCCTGTTATCACAAACAATGTCTGACGGTCAAGAATCAGACAA