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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCTTCTTGGAAAATCGGAGGGACGAGATCATGAGGCTCGTGCAAAAGCTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAGgtaacagtagtttataaggaaaaaaaaaactatttataataatgttatttattaaaaaaatcacacatgataatttagtatgttattgaaaaatatataa...

Basic information

species Glycine max
transcript GLYMA16G26520.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720948|gb|BW682427.1|BW682427
EST:     CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAG                         GTTTTCGGAGATGACATTTAACACTATAATGAGGA
genomic: CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAGgtaacagtag ... ctgaatccagGTTTTCGGAGATGACATTTAACACTATAATGAGGA
EST: gi|213597639|gb|DB962149.1|DB962149
EST:     CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAG                         GTTTTCGGAGATGACATTTAACACTATAATGAGGATGGTGTCAGGGAAGAG
genomic: CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAGgtaacagtag ... ctgaatccagGTTTTCGGAGATGACATTTAACACTATAATGAGGATGGTGTCAGGGAAGAG
EST: gi|209713664|gb|BW681830.1|BW681830
EST:     CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAG                         GTTTTCGGAGATGACATTTAACACTATAATGAGGAT
genomic: CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAGgtaacagtag ... ctgaatccagGTTTTCGGAGATGACATTTAACACTATAATGAGGAT
EST: gi|27425761|gb|CA937281.1|CA937281
EST:     CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAG                         GTTTTCGGAGATGACATTTAACACTATAATGAGGATGGTGTCAGGGAAGAG
genomic: CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAGgtaacagtag ... ctgaatccagGTTTTCGGAGATGACATTTAACACTATAATGAGGATGGTGTCAGGGAAGAG
EST: gi|213603029|gb|DB958600.1|DB958600
EST:     CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAG                         GTTTTCGGAGATGACATTTAACACTATAATGAGGATGGTGTCAGGGAAGAG
genomic: CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAGgtaacagtag ... ctgaatccagGTTTTCGGAGATGACATTTAACACTATAATGAGGATGGTGTCAGGGAAGAG
EST: gi|213604539|gb|DB970659.1|DB970659
EST:     CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAG                         GTTTTCGGAGATGACATTTAACACTATAATGA
genomic: CTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAGgtaacagtag ... ctgaatccagGTTTTCGGAGATGACATTTAACACTATAATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCCTTCTTGGAAAATCGGAGGGACGAGATCATGAGGCTCGTGCAAAAGCTTGCTCGGGACTCGCGCAATGGCTTCACCAAAGTAGAACTTAAATCCAGgtaacagtagtttataaggaaaaaaaaaactatttataataatgttatttattaaaaaaatcacacatgataatttagtatgttattgaaaaatatataa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaata