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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAAAAAGGGAAAAGTAGATCAAATGGGAGATGCAGAGGAGATAATAGAAGTGCTTATGATTTCTTCACCAAAACGTGATGACCTTGTGTTTCCAAAGgtattgtctgaaccaattcacttcatcagcatgaaccctttgtattgtattgcaaagtatcattttgttctctttccag

Basic information

species Glycine max
transcript GLYMA16G26440.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26440.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0068g00870.t01 (Vitis vinifera), 5'ss of exon 2
ATGGAAAAAGGGAAAAGTAGATCAAATGGGAGATGCAGAGGAGATAATAGAAGTGCTTATGATTTCTTCACCAAAACGTGATGACCTTGTGTTTCCAAAGgtattgtctgaaccaattcacttcatcagcatgaaccctttgtattgtattgcaaagtatcatttt--gttctctttccag---------------------------------
|  ||  |||    | | ||| || |     |||   ||| ||| ||||||||| || |||||||||||||| || ||  ||||||| |||||||| ||||||   | |    |   ||  | |  |   ||      || |||| | |        || || | |   ||    |||                                    
ACAGACCAAGAACCATGAAGACCACAGCACTGATTTGGAGAAGACAATAGAAGTTCTCATGATTTCTTCACCCAATCGCAATGACCTAGTGTTTCCCAAGgtacaattttcctcctctc-ttcctcccatattggtaattggtatagaaggattgt-taccactcttaattaaaattctgaggttttgatttttatcctatgtttgcttgtcag