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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAACCACCTACTTCAGCTACGGGTTGCTCTTCGCCTTTGGCCAGTTCAGGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAGgttccaagaagattttacattttacatttaatcttataatgataataattattataataataacaacaacgcgttgatttgtttctcag

Basic information

species Glycine max
transcript GLYMA16G26210.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGGTTGCTCTTCGCCTTTGGCCAGTTCAGGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAGgt-----tccaagaagatt-ttacattttacatttaatcttataatgataataattattataataataacaacaacgcgttgatttgtttctcag-------
  | || ||   ||||||||||||| |||||||||| || |||||| |||||||||||||||| ||  || |||| |||| ||  ||||| |   || ||||          ||| ||   | |    |   | |  ||  ||   | |  |  |  |  ||||  |       |    | ||||| | | |  |       
GCTGACGACGCTCTTCAGCTACGGGCTGCTCTTCGCGTTCGGCCAGCTCAGGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctggcgaaaatcgctgcgggctctctctggtcggatccgggtgtttctcttcgtaattcttgatgagagatttggatttttctttttggacgcag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G142030_T01 (Zea mays), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGGTTGCTCTTCGCCTTTGGCCAGTTCAGGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAGgttc-caagaagattttacattttac--atttaatcttataatgata-ataattattataataataacaacaacgcgttgatttgtttctcag-----------------------
  | |||||    |||||||||||| ||||||||||||| |||||| |||||||||||||||| ||  || ||||||||| ||  ||||| |   || |||| | || |  |      |      |      |||             |     ||       ||  |  |      ||  || || | || |                       
GCTGACCACGCTGTTCAGCTACGGGCTGCTCTTCGCCTTCGGCCAGCTCAGGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcagggcggccggccggccggccggccgaattccgcctccccgcacccggatccgggagatcccgtcccaatttttcttggtatttctgattcagcgtttggcttcatacag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G152888_T01 (Zea mays), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGGTTGCTCTTCGCCTTTGGCCAGTTCAGGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAGgttccaagaagattttacattttacatttaatcttataa---tgataataattattataataataacaacaacgcgttgatttgtttctcag---------------
  | |||||    |||||||||||  ||||||||||||| |||||| |||||||||||||||| ||  || ||||||||| ||  ||||| |   || |||| |   |  |     | |||   | | |   |  |       || |      ||    ||  |          ||| |   || |||   |               
GCTGACCACGCTGTTCAGCTACGGCCTGCTCTTCGCCTTCGGCCAGCTCAGGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggcgggccga-attgcgcctctccccacacggatccgagagattccatcccgatttttcttggtgttcgtaggcctgattcggcgtttggcttcgtgcag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030862_T01 (Zea mays), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGGTTGCTCTTCGCCTTTGGCCAGTTCAGGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCA-Ggttccaagaagatt--ttacattttaca---tttaatcttataatgataataattattataataataacaacaacgcgttgatttgtttctcag----------------------------------------------------------------------------------
            ||||||||||||| ||||||||||||| |||||| |||||||| |||||||  |  |  ||| ||| | |||  ||||||    | | |    |||| || |       |      |   |||||| |  |                | |  || |   |   ||    |      || | |                                                                                   
------------CTTCAGCTACGGGCTGCTCTTCGCCTTCGGCCAGCTCAGGGATCTCTTCCGCCACCTGCTCGGCTGCTTCAGACCCAACAAGGACGACGACGTCAAGCAGgtcggccggaccccggacggtttaatttcctccgcgcgccgggggagagagaaagagagatctcgtcccgcagcagttttaaatttggctgctccaacttttctgaggtggtagtggtaggtggcctgatcccggcggcattgcctctgccttcaattcatgcag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G23670.2 (Arabidopsis thaliana), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGGTTGCTCTTCGCCTTTGGCCAGTTCAGGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAGgttccaagaagattttacattttacatttaatcttataatgataataattattataataataacaacaacgcgttgatttgtttctcag-------------------
  || |||||||||||||||| || |||||||| || ||||| ||| || | |||||||||||     || | || |||||   | | | || |||||||||          | ||   |     || |||| | |    |||    || | | ||  | |      |||    || ||  | |  | |                   
TGTATCCACCTACTTCAGCTATGGATTGCTCTTTGCTTTTGGTCAGCTCCGAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAGgtct-----gtctgttttctccagtatataatgt-acgtagatgtggatcaatgtacaagtttgtttaactttatgcttcttattccggtgaaattggctatcgacag

upper sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGGTTGCTCTTCGCCTTTGGCCAGTTCAGGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAGgttccaagaagattttac----attttacatttaatcttataatgataataattattataataataacaacaacgcgttgatttgtttctcag---------------
 |||||||||||||||||||| || || ||||||| ||| |||||  |||||||  ||||||| ||||| || |||||||   || |||||| ||| |||||  |  |    || |||    |||||    |   | || |  ||        |       || | |   |  | |  | | ||||| ||                  
TTTAACCACCTACTTCAGCTATGGCTTACTCTTCGTCTTCGGCCAAATCAGGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtttcttctacttgtattttgttatggcttttcttgtgtctgcgtctgcgtgcgtagttaattcttcacacttaattgttgctttttccatgctaaagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258687|gb|BG881595.1|BG881595
EST:     GGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAG                         GGTTACGCGCCGATCTGCTTAGGGCTCGAAGATTTCTACATTCGCCGTTTG
genomic: GGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAGgttccaagaa ... tgtttctcagGGTTACGCGCCGATCTGCTTAGGGCTCGAAGATTTCTACATTCGCCGTTTG