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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACCCATTCACACACTGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcacacttaataccctactaattcccttaatctatctatgattctttgatttcaatttcaattattcgatttttttttcatcctttcaatgagattgccgaattaatttgttcaattgaattctgaatag

Basic information

species Glycine max
transcript GLYMA16G26190.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166106|gb|HO009077.1|HO009077
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|209729159|gb|BW660059.1|BW660059
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|151405064|gb|EV274878.1|EV274878
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|254328344|gb|GR835309.1|GR835309
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|298175589|gb|HO018300.1|HO018300
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|209711587|gb|BW676832.1|BW676832
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|298178245|gb|HO023980.1|HO023980
EST:     TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: TGAAATGAGCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|254314226|gb|GR831855.1|GR831855
EST:     GCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: GCAATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
EST: gi|19935453|gb|BQ080447.1|BQ080447
EST:     ATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAG                         GGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC
genomic: ATTTCCAGAGAATATCGCACGAATCCTACCCTCCCCCAGgtacctcaca ... ttctgaatagGGCACGGATCTCCTTACCCTCCACCCCAACCGGGTTACCCATCGGCGCCGC