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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCTGGAGGAAACACCAACCTGGGCTGTTGCGGTTGTGTGTTTTGTGCTGCTTTCGGTTTCAATCGTCATAGAACATATTATTCATGGTATTGGAAAGgtaattaaactaggcagggtttatgttttactcaaaagacatgcttattattattattattattattaatgttgttaaccataaagtagaataaatagtt...

Basic information

species Glycine max
transcript GLYMA16G26100.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g04060.t01 (Vitis vinifera), 5'ss of exon 1
AACTCTGGAGGAAACACCAACCTGGGCTGTTGCGGTTGTGTGTTTTGTGCTGCTTTCGGTTTCAATCGTCATAGAACATATTATTCATGGTATTGGAAAGgtaattaaactaggcagggtttatgtt----ttactcaaaagacatgcttattattattattatt-attattaatgttgttaaccataaagtagaataaatagtt
 | | |||||||||| || || ||||||||||| || || || |||||| ||||| | ||||| ||| |||| ||||||||| |||||  |||||||  |||||     ||  |     ||  ||      ||  |||  |||    |||  |    | |||||| || |  | | || ||    || |  |  |   ||     
TAGTTTGGAGGAAACGCCTACTTGGGCTGTTGCAGTGGTCTGCTTTGTGTTGCTTGCTGTTTCGATCTTCATCGAACATATTTTTCATCTTATTGGATCGgtaaggctgcttagttattttcctgacggggttgatcagtagagtgccttgctgc--tcattattcatcaacacttttcttggtgatgatatccatggaagg---

upper sequence: GLYMA16G26100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 1
AACTCTGGAGGAAACACCAACCTGGGCTGTTGCGGTTGTGTGTTTTGTGCTGCTTTCGGTTTCAATCGTCATAGAACATATTATTCATGGTATTGGAAAGgtaattaaactaggcagggtttatgttttactcaaaagacatgcttattattattattattatt--attaatgttgttaaccataaagtaga-ataaatagtt
 | | ||  |||||| || || ||||||||||| || || ||||||||| ||||| | ||||| ||| |||| |||||||||||||||  |||||||  |||||     ||      |   | || |||  |  | |         ||  |  | || |||  |  | || | || ||    || |  |  |   ||| |   
TAGTTTGACGGAAACGCCTACTTGGGCTGTTGCAGTGGTCTGTTTTGTGTTGCTTGCTGTTTCGATCTTCATCGAACATATTATTCATCATATTGGATCGgtaaggctgcttaaatagtagtttgctttgttggagaactccatggatgctgctcatcattcatcaaatacttttcttggtgatgatatccatggaaaca---