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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCACCATAAGAAGCTGCATTTTGGGGTCTAACACTTGTGCAAAGCTTGCCTTTTGGACCCCTCTTGATTACGTGCAGAGGGACATGTCTCCCATTCAGgtacgtacccaaatttgtagtttgtttctatgagtatttgttatatatactcaatggattcaaatgagttctattattcatacattaagtttaggataaa...

Basic information

species Glycine max
transcript GLYMA16G26080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26080.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g04050.t01 (Vitis vinifera), 5'ss of exon 1
GAGCACCATAAGAAGCTGCATTTTGGGGTCTAACACTTGTGCAAAGCTTGCCTTTTGGACCCCTCTTGATTACGTGCAGAGGGACATGTCTCCCATTCAGgt-acgtacccaaatttgtagtttgtttctatgagtatttgttatatatactcaat--ggattcaaatgagttc---tattattcatacattaagtttaggataaa
||||||||| || |||||||| ||||| || |||||||||||  || |||| | |||||| ||||| |||||  || ||||||||||| |||| |||||||| |  | |   |  ||       | || | | |||  || | | |   | |  ||  || || |  | | ||    |  ||| |   || ||  | ||       
GAGCACCATCAGGAGCTGCATATTGGGTTCAAACACTTGTGCCCAGATTGCTTCTTGGACTCCTCTCGATTATCTGGAGAGGGACATGACTCCTATTCAGgttatcttctttacctttcttcaaggttgtttcagtgattttgaaactcattttattaggttttacctcaattaccgtgatatcctagcaatatatatat------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330635|gb|FK021954.1|FK021954
EST:     CCTTTTGGACCCCTCTTGATTACGTGCAGAGGGACATGTCTCCCATTCAG                         TCAGGATGTTGTAAGCCACCAACAGCGTGCATGTACAACGAGGAAACAGTG
genomic: CCTTTTGGACCCCTCTTGATTACGTGCAGAGGGACATGTCTCCCATTCAGgtacgtaccc ... atgcatgcagTCAGGATGTTGTAAGCCACCAACAGCGTGCATGTACAACGAGGAAACAGTG