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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGCTATGGACAAATTCCCAGAAAAGGTTGTAGTTGGTGTTTTCTTAGCTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAGgtatatatatgcttcttagtagtgaggttattacttgagaattttttcagttttcttacttatgcatgttccgtgaaaaaagagactatcaaaatctata...

Basic information

species Glycine max
transcript GLYMA16G26050.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412179|gb|EV281991.1|EV281991
EST:     CTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAG                         GACACGTCGTCTGAAGACTTGGACAATGAATTTGCCCCAAGTGGAAACAAA
genomic: CTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAGgtatatatat ... acttctccagGACACGTCGTCTGAAGACTTGGACAATGAATTTGCCCCAAGTGGAAACAAA
EST: gi|15813097|gb|BI785372.1|BI785372
EST:     CTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAG                         GACACGTCGTCTGAAGACTTGGACAATGAATTTGCCCCAAGTGGAAACAAA
genomic: CTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAGgtatatatat ... acttctccagGACACGTCGTCTGAAGACTTGGACAATGAATTTGCCCCAAGTGGAAACAAA
EST: gi|192307400|gb|FK000756.1|FK000756
EST:     CTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAG                         GACACGTCGTCTGAAGACTTGGGCAATGAATTTGCCCCAAGTGGAAACAAA
genomic: CTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAGgtatatatat ... acttctccagGACACGTCGTCTGAAGACTTGGACAATGAATTTGCCCCAAGTGGAAACAAA
EST: gi|38191128|gb|CF920334.1|CF920334
EST:     CTGCTTTTGCTCCAGACACTGAGCACAGCCCATCTTATGTCTTGGAACAG                         GACACGTCGTCTGAAGACTTGGACAATGAATTTGCCCCAAGTGGAAACAAA
genomic: CTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAGgtatatatat ... acttctccagGACACGTCGTCTGAAGACTTGGACAATGAATTTGCCCCAAGTGGAAACAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTTGCTATGGACAAATTCCCAGAAAAGGTTGTAGTTGGTGTTTTCTTAGCTGCTTTTGCTCCAGACACTGAACACAGCCCATCTTATGTCTTGGAACAGgtatatatatgcttcttagtagtgaggttattacttgagaattttttcagttttcttacttatgcatgttccgtgaaaaaagagactatcaaaatctata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaaa