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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTCCCTTCAGGCTGATCTTAAGGACTTGGCTCACAAGTGTGTTGATGCTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctcttgcttttcctccaatttactgtcattttgttcattgaagaattgactatcttctgtttactaaaatagtatatagtatcatagtgaagt...

Basic information

species Glycine max
transcript GLYMA16G25860.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25860.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G66570.1 (Arabidopsis thaliana), 5'ss of exon 1
ATGCTCCCTTCAGGCTGATCTTAAGGACTTGGCTCACAAGTGTGTTGATGCTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctcttgcttttc--ctccaatttactgtcattttgttcattgaagaattgactatcttctgtttactaaaatagtatatagtatcatagtgaagt
 |||||| | ||| ||||  ||||||||||  |    || ||    || |||  |||||| || |||||||| |||||||||||||| ||||| ||||| |||   |   ||  | | |  |||   ||||     ||    || ||  |  ||   |        ||  ||  | |  || | |   | |  | |||    
TTGCTCCTTCCAGTCTGACTTTAAGGACTTCACCGGTAAATGCTCCGACGCTGTCAAAATCGCCGGATTCGCTCTTGCCACCTCTGCTCTCGTCGTCTCGgtaactttctttaatctccgactctcctttaaaactatag-attaatcaagaaaaaaaaggagaattgagtaacagagaagaagagtattttgttgtgttt-

upper sequence: GLYMA16G25860.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0207g00210.t01 (Vitis vinifera), 5'ss of exon 1
ATGCTCCCTTCAGGCTGATCTTAAGGACTTGGCTCACAAGTGTGTTGATGCTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctct-----cttgctt--ttcctccaatttactgtcattttgttcattgaagaattgactatcttctgtttactaaaatagtatatagtatcatagtgaagt
 |||||  | ||||||||||| |||||||||||||||||||| || ||||| || || || || || || || |||||||| ||||| ||| | ||||| ||  || |      || | ||  || ||      |   |  | |      |   ||| || ||  |||   ||     | |   |     ||   ||          
TTGCTCTTTGCAGGCTGATCTCAAGGACTTGGCTCACAAGTGCGTGGATGCCACTAAGATCGCCGGCTTTGCTCTTGCCACTTCTGCTCTCCTCGTCTCGgtgagcaccactaactcgtttatttgcttttggctttcgataatccacataaaaaagtatggatcatcaggtgcagcttgatgcaacgcgtatcttcgat-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899722|gb|BE608690.1|BE608690
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|13480253|gb|BG509596.1|BG509596
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209707762|gb|BW683654.1|BW683654
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213603362|gb|DB970459.1|DB970459
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209718874|gb|BW669061.1|BW669061
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213605545|gb|DB970688.1|DB970688
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|10235128|gb|BE804016.1|BE804016
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|10846898|gb|BF069749.1|BF069749
EST:     CTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213618356|gb|DB967677.1|DB967677
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120531827|gb|EH259960.1|EH259960
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|10842881|gb|BF066242.1|BF066242
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|15285521|gb|BI469412.1|BI469412
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|7640656|gb|AW734953.1|AW734953
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|6072426|gb|AW101813.1|AW101813
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209706759|gb|BW678126.1|BW678126
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|17401861|gb|BM178643.1|BM178643
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|9899203|gb|BE608101.1|BE608101
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|10844309|gb|BF067618.1|BF067618
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|13481027|gb|BG510370.1|BG510370
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|6483203|gb|AW202383.1|AW202383
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTC-ACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120496163|gb|EH224330.1|EH224330
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|7692136|gb|AW760250.1|AW760250
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|10844100|gb|BF067437.1|BF067437
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|151407694|gb|EV277509.1|EV277509
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|9204232|gb|BE330456.1|BE330456
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213594438|gb|DB973651.1|DB973651
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|192315121|gb|FK009945.1|FK009945
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|22523586|gb|BU082397.1|BU082397
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|17519134|gb|BM188176.1|BM188176
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120533036|gb|EH261169.1|EH261169
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|10846644|gb|BF069480.1|BF069480
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|7691687|gb|AW759810.1|AW759810
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120530076|gb|EH258210.1|EH258210
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|26047779|gb|CA784458.1|CA784458
EST:     CCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|151400206|gb|EV270020.1|EV270020
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCCCCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGT-TTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|193666489|gb|FK608446.1|FK608446
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|17964493|gb|BM271227.1|BM271227
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209729650|gb|BW669750.1|BW669750
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120496324|gb|EH224491.1|EH224491
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120528777|gb|EH256911.1|EH256911
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|26047757|gb|CA784449.1|CA784449
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|5688019|gb|AI941034.1|AI941034
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209721761|gb|BW682602.1|BW682602
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|5677693|gb|AI938823.1|AI938823
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|6134820|gb|AW133213.1|AW133213
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|7640235|gb|AW734540.1|AW734540
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298197964|gb|HO039503.1|HO039503
EST:     CTACCAAAATTGCAGGGTTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213608621|gb|DB967124.1|DB967124
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298195671|gb|HO044062.1|HO044062
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213604408|gb|DB970612.1|DB970612
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|151403948|gb|EV273758.1|EV273758
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298178057|gb|HO027440.1|HO027440
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298199288|gb|HO042651.1|HO042651
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|15287981|gb|BI471872.1|BI471872
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|20075881|gb|BQ094664.1|BQ094664
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|7283407|gb|AW596015.1|AW596015
EST:     CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCT                         GGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctc ... ggacatatagGGGGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCTCCCTTCAGGCTGATCTTAAGGACTTGGCTCACAAGTGTGTTGATGCTACCAAAATTGCAGGATTCGCCCTTGCCACCTCTGCCCTCGTTGTCTCTgtatgctctcttgcttttcctccaatttactgtcattttgttcattgaagaattgactatcttctgtttactaaaatagtatatagtatcatagtgaagt

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