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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATGGGATCCTCCACTCAGGTTATCCGCGACGGCGCCGTTTCCGTCCTCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACGgtaagagaaaacgaagaagatgcactttagagaataaaatgcaccaataatcattgaggttttatctgatttgtagaatttgttatgcatatacttgatt...

Basic information

species Glycine max
transcript GLYMA16G25310.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25310.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g01860.t01 (Vitis vinifera), 5'ss of exon 1
CATCATGGGATCCTCCACTCAGGTTATCCGCGACGGCGCCGTTTCCGTCCTCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACGgtaagagaaaacgaagaagatgcactttagagaataaaatgcaccaataatcattgaggttttatctgatttgtagaatttgttatgcatatacttgatt
||| |||||||||||| | ||| | |||||||||  | |||| ||||||||| | |||||||||||||| ||  ||||||||||||| ||||||||||| ||||  | |           | ||| |  | ||     ||    | ||  ||||     ||| |    |||    || ||||| ||   | |        
CATTATGGGATCCTCCGCGCAGATCATCCGCGACAACTCCGTCTCCGTCCTCCTATGCGTCCTCATCGTTGCTCTGGGTCCCATTCAGTTCGGCTTCACCgtaattgca---ccgttttttccacctctgtgatgttgatt--tcgattctcatgagtttttgaatacattgactgagtttgtaatcgttgttgacag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213614733|gb|DB973076.1|DB973076
EST:     TCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACG                         TGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTC
genomic: TCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACGgtaagagaaa ... tttggcgcagTGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTC
EST: gi|11412307|gb|BF424318.1|BF424318
EST:     TCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACG                         TGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTC
genomic: TCTTCTGCGTCCTCATCGTCGCCTTGGGTCCCATTCAATTCGGCTTCACGgtaagagaaa ... tttggcgcagTGTGGGTATTCTTCTCCAACCCAAGGGGCTATAGTTCGCGATCTAAACCTC