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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTGAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctccttcacttgtttgcatcaacattgataagattaattttaaattgaattgattttgatgtgattagttattattatttttattcattgtag...

Basic information

species Glycine max
transcript GLYMA16G25220.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25220.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G18290.1 (Arabidopsis thaliana), 5'ss of exon 1
TAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTGAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgt-aatccctccttcacttgtttgcatcaacattgataagattaattttaaattgaattgattttgatgtgattagttattattatttttattcattgtag
|||  || ||||| || || || ||||||||||| || || || || ||||| || |||||  || ||||||| |||||||||||||| |||||||||||||  |     |    |      |  | |     |  |    | | | ||    |  ||| | ||  | |     | || || || ||| |    |||||||
TAAGAGAGATGGGTAAAAACGCAGCTTGGAGCGTTAGCTCTTGTAAGCCCGGCAATGGCGTCACCACTCTCCGCGACGACAATCTCGAGACTTATTGGCAgttgagaaaacgaaaaaaaaactaaagctcttatctttccctcattctttgtctctattcaattaaaggattcgacttttttttgtttctgaa-attgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183131|gb|HO028394.1|HO028394
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
EST: gi|298190530|gb|HO032651.1|HO032651
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
EST: gi|15286034|gb|BI469925.1|BI469925
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
EST: gi|193720627|gb|FK657769.1|FK657769
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGTA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGTAAAG
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAG-AAAG
EST: gi|22540274|gb|BU090117.1|BU090117
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
EST: gi|151404299|gb|EV274109.1|EV274109
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTCTCAGAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
EST: gi|207810450|gb|GD781140.1|GD781140
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTT
EST: gi|207814375|gb|GD786898.1|GD786898
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
EST: gi|298186464|gb|HO037097.1|HO037097
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAgtaatccctc ... ttgctttcagATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGT