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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTCAGTTCAATGGCTTCTTCCATCTGTGCTCTCTCGCCTTCCGTCCAATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatctatctctgttattatgtaccttttttcactaactttgaggatgttttgttgctgagtagtacttttggtgttgtttgaag

Basic information

species Glycine max
transcript GLYMA16G25200.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604690|gb|DB960469.1|DB960469
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|151399986|gb|EV269857.1|EV269857
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATCGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|209728317|gb|BW658529.1|BW658529
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|209725699|gb|BW663190.1|BW663190
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|192301616|gb|FG998468.1|FG998468
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCACTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|18692833|gb|BM521681.1|BM521681
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|213591367|gb|DB955715.1|DB955715
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|20448288|gb|BQ252412.1|BQ252412
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|13125828|gb|BG316398.1|BG316398
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|120529684|gb|EH257818.1|EH257818
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|20814627|gb|BQ299105.1|BQ299105
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
EST: gi|209716247|gb|BW657550.1|BW657550
EST:     ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAAC                         GAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG
genomic: ATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatc ... ttgtttgaagGAAGCAAGTGCGAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATTCAGTTCAATGGCTTCTTCCATCTGTGCTCTCTCGCCTTCCGTCCAATCACAGCTCACTAAAACCACCCTCGTTGCTCCAATCCCTCTCTATCAACgtaacacatctatctctgttattatgtaccttttttcactaactttgaggatgttttgttgctgagtagtacttttggtgttgtttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA