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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGAAGTCGAACTCTAATAACATGGAGAAGCTTGAGACGTGGAAGATGGCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGGgtatgtacccttcctcacttactttattttaaattctttaattttgacttgtctaatcacactttaacgttcaattttaaagagatcaaattataatcac...

Basic information

species Glycine max
transcript GLYMA16G25120.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496236|gb|EH224403.1|EH224403
EST:     GCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGG                         GAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAA
genomic: GCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGGgtatgtaccc ... tgttgaacagGAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAA
EST: gi|120496781|gb|EH224948.1|EH224948
EST:     GCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGG                         GAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAA
genomic: GCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGGgtatgtaccc ... tgttgaacagGAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAA
EST: gi|209711851|gb|BW674111.1|BW674111
EST:     GCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGG                         GAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAA
genomic: GCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGGgtatgtaccc ... tgttgaacagGAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAA
EST: gi|17519542|gb|BM188584.1|BM188584
EST:     GCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGG                         GAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAA
genomic: GCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGGgtatgtaccc ... tgttgaacagGAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCGGTGTCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAGAAGTCGAACTCTAATAACATGGAGAAGCTTGAGACGTGGAAGATGGCTCTGCACCAAGTGTCTAACATTTCTGGCCATCATTTCCAACATGATGGgtatgtacccttcctcacttactttattttaaattctttaattttgacttgtctaatcacactttaacgttcaattttaaagagatcaaattataatcac

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