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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttacttctattagtattagaagtgaaactcatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag

Basic information

species Glycine max
transcript GLYMA16G24830.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02260.t01 (Vitis vinifera), 5'ss of exon 1
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatat-----tgcttacttctattagt--attagaagtgaaactcatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag
 |   |  | || ||||| || |||||||| |||||| | ||||| |   |||||||||||||||||||||| ||||| || || |||||| | ||| ||||   | | |   | ||  |     | ||  ||| |  |  |  |||||||   |||   |  |||   ||||| ||||  | | ||| |      ||||                                                              
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACGGCAGGCTCTTCCCCAGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtgactctttgcttttaattaaaaatactggcttatgatgatttattagaaaccaaa---aagaaagcaagtgagttagaaatt-tca-attgttcgtcag-------------------------------------------------------------

upper sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 2
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttacttctattagtattagaagtgaaactcatcaa-aattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag
 |   |  | || ||||| || |||||||| |||||| | ||||| |   ||||||| |||||||||||||| |||||||| || |||||| | ||| ||||   | | |   |     ||  |||    || | || |  || |    | | || |  ||  |   |   ||  ||||    ||||| |   | |     | |                                                    
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACGGCAGGCTCTTCCCCAGCAAAAGTCTCCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAGgtgactctttgctt-----ttaattaaaaatactggtttatgatg----atttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcatcag---------------------------------------------------

upper sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02220.t01 (Vitis vinifera), 5'ss of exon 2
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttacttctattagtattagaagtgaaactcatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag
 || |||   || ||||| |||||||||||||||||| ||||||| || | |||||| |||||||||||||| ||||| ||| | || ||||| ||| ||||     ||||| | ||  ||    |  | || || |||    | ||| |   |   ||    |  ||| |    | ||  |  |  || ||| |||                                                          
TTATTTCATGGGAGTTCCGGGTTCTTTCTATGGCAGGCTTTTCCCTAACCGAAGTCTACATTTTGTCCATTCTTCTTACAGCGTGCATTGGCTGTCTCAGgtgaccctatatttgtac-ttttacagctatagtaatatattgactgacaaagaaggaaccatgaaattcatttggagt--gcaattgt-tcattag----------------------------------------------------------

upper sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02310.t01 (Vitis vinifera), 5'ss of exon 2
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgct--tacttctattagt-attagaagtgaaactcatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag
 | | |  | || ||||| |||||||||||||||||| | ||||| |   |||||||||||||| ||||||| ||||| || || || ||||| ||| | ||  || | |     ||  |   |  |  ||| ||   | ||||  |   || |   |||   ||||   |||     ||     ||                                                                       
TTTCGTAACCGGAGTTCCAGGTTCTTTCTATGGCAGGCTCTTCCCCAGCGAAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCACTGGCTGTCTCATgtgaatctttgctcttaattaaatagtggttcaatcgttcattaagaagaaagcatgtca--gttagaagtttcaatcgttcatcag-----------------------------------------------------------------------

upper sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02290.t01 (Vitis vinifera), 5'ss of exon 2
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttact--tctattagtattagaagtgaaactcatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag
 | | |    || ||||| ||||||||||| |||||| | ||||| |   |||||||||||||| ||||||| ||||| || || |||||| | ||| ||||   | | |   | || |||   || |  | ||| |  |||     | || |      ||| ||   |  | || ||| |||   |  || |||  ||                                                          
TTTCATAAACGGAGTTCCAGGTTCTTTCTACGGCAGGCTGTTCCCCAGCAAAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtgactctttgc-tctaaattaaatagtggtttatgatgatttattatcaaccaagaagaaagtatgtaagttggaagtttca---attgt-tcatcag----------------------------------------------------------

upper sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02240.t01 (Vitis vinifera), 5'ss of exon 2
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttacttctattagtattagaagtgaaactcatcaa-aattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag
 |   |  | || ||||| || ||||||||  ||||| | ||||| |   |||||||||||||||||||||| ||||| || || |||||| | ||| ||||   | | |   |     ||  |||    || | || |  || |    | | || |  ||  |   |   ||  ||||    ||||| |   | |     | |                                                    
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACTGCAGGCTCTTCCCCAGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtgactctttgctt-----ttaattaaaaatactggtttatgatg----atttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcgtcag---------------------------------------------------

upper sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02280.t01 (Vitis vinifera), 5'ss of exon 2
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttact--tctattagtattagaagtgaaactcatcaaaatta-gtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag
 |   |  | || ||||| ||||||||||| |||||| | ||||      |||||||||||||||||||||| ||||| || || |||||||| ||| ||||   | | |     || |||   || |  | ||| |  |||     | || |      |||  | || | ||||  ||| |||   |  || |||  ||                                                          
TTTTGTAACCGGAGTTCCAGGTTCTTTCTACGGCAGGCTCTTCCTGGGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGCTGTCTCAGgtgactttttgccctta-attaaataatggtttatgatgatttagtattaaccaagaagaaagcatgtaagttaga-agtttca---atcgt-tcatcag----------------------------------------------------------