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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAATGGCAGTGGGAGAACGCCACCGCCGGCGCCGCCGCCGGATTCGCCACTGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAGgttctctctcactcactcttctcatataaaccaacatttcttatttttgacgccttcgaattcttagaagcattatttgtttctgcag

Basic information

species Glycine max
transcript GLYMA16G24580.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24580.2 (Glycine max), 5'ss of exon 1
lower sequence: AT5G66380.1 (Arabidopsis thaliana), 5'ss of exon 1
GACCAATGGCAGTGGGAGAACGCCACCGCCGGCGCCGCCGCCGGATTCGCCACTGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAGgttctctctcactcactcttctcatataaaccaacatttcttatttttgacgccttcgaattcttagaagcattatttgtttctgcag
|     ||||||||||| || |||||||||||||||| ||| ||||||||||| || || |  |||||  | || |||||||| || || || |||||||||    | |   ||||||  ||    |||  || |  || |  ||||  |    | | || |      | ||  |             
GCGTCGTGGCAGTGGGAAAATGCCACCGCCGGCGCCGTCGCTGGATTCGCCACCGTAGCTGCTATGCACTCTCTTGATGTTGTTCGTACGAGATTCCAAGgtctggttt--ttcactc--ctggattaactcatcgattttgcttttaaaaagttgctaacttgattgaacaacag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812157|gb|BQ296635.1|BQ296635
EST:     CACTGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAG                         TTAACGATGGTCGAGTCTCTCATCTTCCTATTTACAAGAACACTGCTCACG
genomic: CACTGTCGCCGTCATGCATCCCCTCGATGTTGTCCGAACTAGGTTCCAAGgttctctctc ... gtttctgcagTTAACGATGGTCGAGTCTCTCATCTTCCTATTTACAAGAACACTGCTCACG