Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCAACAGCAGCTCATGGCGTTACATCAGCAACAGCAAGAACAACAACAACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatgacacacactactactcactcataaatacatacatacatacattacactcccagtgccttttttgtttttgtctttgtctttgtttgttca...

Basic information

species Glycine max
transcript GLYMA16G24510.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208326818|gb|GE120318.1|GE120318
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193344963|gb|FK311589.1|FK311589
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGACGGAA
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAG-CGGAA
EST: gi|193605311|gb|FK558585.1|FK558585
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193488797|gb|FK454968.1|FK454968
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193318308|gb|FK285830.1|FK285830
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193656342|gb|FK602814.1|FK602814
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207705785|gb|GD686861.1|GD686861
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193718914|gb|FK649580.1|FK649580
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCA-TTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207736638|gb|GD711775.1|GD711775
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193546258|gb|FK503219.1|FK503219
EST:     AGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: AGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|208301380|gb|GE098261.1|GE098261
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193620037|gb|FK567190.1|FK567190
EST:     GAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207708626|gb|GD690924.1|GD690924
EST:     CGGCCGGGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207829985|gb|GD801901.1|GD801901
EST:     CGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207725774|gb|GD701874.1|GD701874
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|208075105|gb|GD876386.1|GD876386
EST:     CGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193516366|gb|FK476400.1|FK476400
EST:     CGGCCGGGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|208150363|gb|GD950842.1|GD950842
EST:     CGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCGGCGGAAT
genomic: CGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193722583|gb|FK659175.1|FK659175
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193727902|gb|FK665904.1|FK665904
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193470234|gb|FK435041.1|FK435041
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193401609|gb|FK366282.1|FK366282
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193635459|gb|FK582586.1|FK582586
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207825731|gb|GD800998.1|GD800998
EST:     GCCGAGGGATTCTCGTTTTGTTCCTTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAA
genomic: GCCGAGGGATTCTCG-TTTG-TCC-TCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAA
EST: gi|207832144|gb|GD805194.1|GD805194
EST:     CGGCCGGGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|208332439|gb|GE126548.1|GE126548
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207830058|gb|GD801414.1|GD801414
EST:     CGGCCGGGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|208177835|gb|GD979132.1|GD979132
EST:     CGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207707076|gb|GD689220.1|GD689220
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193711175|gb|FK644372.1|FK644372
EST:     CAGAAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CAG-AGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193484813|gb|FK452065.1|FK452065
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193556123|gb|FK511430.1|FK511430
EST:     CGGCCGGGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193566902|gb|FK523799.1|FK523799
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|207786764|gb|GD757981.1|GD757981
EST:     CGGCCGAGGGATTCTTCGTTTTGTTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCGGCGGAAT
genomic: CGGCCGAGGGATTC-TCG-TTTG-TCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193722517|gb|FK662583.1|FK662583
EST:     ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: ACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|208301912|gb|GE099478.1|GE099478
EST:     GGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|208107494|gb|GD903853.1|GD903853
EST:     GGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: GGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
EST: gi|193500756|gb|FK464553.1|FK464553
EST:     CGGCCGGGGGATTCTCGTTTGTCCTCGTCAG                         GGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT
genomic: CGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatg ... tttttctaagGGTTAGAGGAAGAAGGGCATTTTCCTTCTGTGGTTAGTTCTCCAGCGGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCAACAGCAGCTCATGGCGTTACATCAGCAACAGCAAGAACAACAACAACAGAGAGACATCTCCAAGCGGCCGAGGGATTCTCGTTTGTCCTCGTCAGgtacataatgacacacactactactcactcataaatacatacatacatacattacactcccagtgccttttttgtttttgtctttgtctttgtttgttca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactccc