Sequence
atgc intronic sequence ATGC exonic sequenceGTAACTGTTTTCACTCCAATTGCAGGTCACTTGGAACATGCTCGGGTGCACCCCAAGTTTTTGCATTCTAATGCAACTTCCCATAAATGGGCTTTTGGAGgtgtggtttctctggctctcttgtgtttgaacaaattttgggatttgatttgatttgtaaaagaagttctttgtttgaaagttctgagataaaaattcat...
Basic information
species | Glycine max |
transcript | GLYMA16G24450.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G24450.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G36290.1 (Arabidopsis thaliana), 5'ss of exon 2
GTAACTGTTTTCACTCCAATTGCAGGTCACTTGGAACATGCTCGGGTGCACCCCAAGTTTTTGCATTCTAATGCAACTTCCCATAAATGGGCTTTTGGAGgtgtggtttctctggctctcttgtgtttgaacaa--attttgggatttgatttgatttgtaaaagaagttctttgtttgaaagttctgagataaaaattcat
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-------------------------GTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTACTTCACATAAATGGGCTTTTGGAGgtaaag---ctatgaatatactctgttttagctatcagttggtagaacgaatcagttttgtgatgatcatgtttgtattgaatcgcag--------------
upper sequence: GLYMA16G24450.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g02740.t01 (Vitis vinifera), 5'ss of exon 2
GTAACTGTTTTCACTCCAATTGCAGGTCACTTGGAACATGCTCGGGTGCACCCCAAGTTTTTGCATTCTAATGCAACTTCCCATAAATGGGCTTTTGGAGgtgtggtttctctggctctcttgtgtttgaacaaattt--tgggatttgatttgatttgtaaaagaagttctttgtttgaaagttctgagataaaaattcat--------------------------------------
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-------------------------ATCAATTGGAACATGCTCGCGTTCATCCCAAGTTTCTGCACTCCAATGCCACTTCTCATAAATGGGCTTTTGGAGgta-agtttttgtgtcataaaaacaagagaaagaaaggaattgcaggtgcttgaactcgagaattatatttcttctctatctat-ctgggattagaatgtatttgatagggttttttcttttttctttttttttttccag
upper sequence: GLYMA16G24450.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ08242 (Selaginella moellendorffii), 5'ss of exon 1
GTAACTGTTTTCACTCCAATTGCAGGTCACTTGGAACATGCTCGGGTGCACCCCAAGTTTTTGCATTCTAATGCAACTTCCCATAAATGGGCTTTTGGAGgtgtggtttctctggctctcttgtgtttgaacaaattttgggatttgatttgatttgtaaaagaagttctttgtttgaaagttctgagataaaaattcat
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---------------GTGGTCTCAGGTGGCATGGATCACGTCCGAGTCCATCCCAAGTTCCTACATTCCAATGCAACTTCTCACAAATGGGCTCTTGGAGgtgtggcttttgttctccttctttatacataca---tttccctttcgctttaaactaaaagggagctttcatgtcctcgtttttgcag------------
upper sequence: GLYMA16G24450.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ29839 (Selaginella moellendorffii), 5'ss of exon 1
GTAACTGTTTTCACTCCAATTGCAGGTCACTTGGAACATGCTCGGGTGCACCCCAAGTTTTTGCATTCTAATGCAACTTCCCATAAATGGGCTTTTGGAGgtgtggtttctctggctctcttgtgtttgaacaaattttgggatttgatttgatttgtaaaagaagttctttgtttgaaagttctgagataaaaattcat
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------------------------GGTGGCATGGATCACGTCCGAGTCCATCCCAAGTTCCTACATTCCAATGCAACTTCTCACAAATGGGCTCTTGGAGgtgtggcttttgttctccttctttatacataca---tttccctttcgctttaaactaaaagggagctttcatgtcctcgtttttgcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208049587|gb|GD844892.1|GD844892EST: TTGCATTCTAATGCAACTTCCCATAAATGGGCTTTTGGAG CAATTGCTGAGCTTGTGGATAATGCTGTTGACGAG
genomic: TTGCATTCTAATGCAACTTCCCATAAATGGGCTTTTGGAGgtgtggtttc ... ttattggcagCAATTGCTGAGCTTGTGGATAATGCTGTTGACGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAACTGTTTTCACTCCAATTGCAGGTCACTTGGAACATGCTCGGGTGCACCCCAAGTTTTTGCATTCTAATGCAACTTCCCATAAATGGGCTTTTGGAGgtgtggtttctctggctctcttgtgtttgaacaaattttgggatttgatttgatttgtaaaagaagttctttgtttgaaagttctgagataaaaattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaaa