Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAAAGTGACGCAACCTCTCTCTCTTCTTTTCTTCAGTTCGGTGGAGGGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttgttgcctaatctcctcttcacaatggtttcgatcctttttctttcgacattttacttgaattaactctccaatctgtatgaaatgacctgg...

Basic information

species Glycine max
transcript GLYMA16G23730.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725149|gb|BW663076.1|BW663076
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|16348394|gb|BI973989.1|BI973989
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|17154047|gb|BM143980.1|BM143980
EST:     AGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298180253|gb|HO025468.1|HO025468
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298176453|gb|HO026688.1|HO026688
EST:     TAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: TAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|14991140|gb|BI316813.1|BI316813
EST:     GTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|4313657|gb|AI460776.1|AI460776
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298190839|gb|HO032960.1|HO032960
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|10847497|gb|BF070175.1|BF070175
EST:     GAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298191204|gb|HO038683.1|HO038683
EST:     GGAGGAAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|192331864|gb|FK026648.1|FK026648
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|209706132|gb|BW653424.1|BW653424
EST:     GGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298194785|gb|HO043257.1|HO043257
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|213606544|gb|DB972493.1|DB972493
EST:     GGAG-CGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|21677168|gb|BQ629519.1|BQ629519
EST:     AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|213619445|gb|DB963411.1|DB963411
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|193696755|gb|FK638401.1|FK638401
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|208299345|gb|GE100552.1|GE100552
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|7684838|gb|AW755486.1|AW755486
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298178682|gb|HO024417.1|HO024417
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|192297728|gb|FG989963.1|FG989963
EST:     GGAGGGAGCCGTAGCTGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|16346110|gb|BI971705.1|BI971705
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|7145675|gb|AW507597.1|AW507597
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|207757066|gb|GD728120.1|GD728120
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTGAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298163757|gb|HO012490.1|HO012490
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|5687916|gb|AI940931.1|AI940931
EST:     GGAGGGAGCCGCAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|46492670|gb|CN472226.1|CN472226
EST:     AGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|12772845|gb|BG237772.1|BG237772
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTA-CTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|16347050|gb|BI972645.1|BI972645
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|6134564|gb|AW132957.1|AW132957
EST:     AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298176076|gb|HO015481.1|HO015481
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298194198|gb|HO040846.1|HO040846
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|11275151|gb|BF325474.1|BF325474
EST:     GGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298180780|gb|HO022219.1|HO022219
EST:     GGAGGGAGCCGTAACAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|18040225|gb|BM308519.1|BM308519
EST:     AGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|208123459|gb|GD924081.1|GD924081
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCATGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATT
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATT
EST: gi|209706237|gb|BW656742.1|BW656742
EST:     AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298197686|gb|HO045165.1|HO045165
EST:     GGAGGGAGCCGCAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|21678409|gb|BQ630760.1|BQ630760
EST:     TCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: TCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298192769|gb|HO033203.1|HO033203
EST:     AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298186856|gb|HO033955.1|HO033955
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|209723174|gb|BW675120.1|BW675120
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|8670337|gb|BE191444.1|BE191444
EST:     GGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|151397451|gb|EV267324.1|EV267324
EST:     GGAGGGAACCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298188698|gb|HO035391.1|HO035391
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|207803385|gb|GD775802.1|GD775802
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|19453490|gb|BM954900.1|BM954900
EST:     GAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|23727040|gb|BU761534.1|BU761534
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|6914313|gb|AW395843.1|AW395843
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|7145645|gb|AW507567.1|AW507567
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298178660|gb|HO024395.1|HO024395
EST:     AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|13787383|gb|BG649975.1|BG649975
EST:     GGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|16347648|gb|BI973243.1|BI973243
EST:     GGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|10846181|gb|BF069142.1|BF069142
EST:     GCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298169099|gb|HO020459.1|HO020459
EST:     GGAGGGAGCCGTAACAGCGGAAGCTTTAGCTTGGGTAGCGAATCTCAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298180270|gb|HO025485.1|HO025485
EST:     GGAGGGAGCCGCAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298176172|gb|HO015577.1|HO015577
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|209729579|gb|BW655155.1|BW655155
EST:     GGAG-CGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|21888969|gb|BQ742182.1|BQ742182
EST:     GGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|8282756|gb|BE020317.1|BE020317
EST:     GCGGAAGCTCTAGCTTGGGCAGCGAATCACAATG                         GCGAGAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298195263|gb|HO043791.1|HO043791
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|298197240|gb|HO041983.1|HO041983
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|19453552|gb|BM954962.1|BM954962
EST:     AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: AGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|207832084|gb|GD805134.1|GD805134
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATCAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTAG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|7234791|gb|AW570124.1|AW570124
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
EST: gi|208289305|gb|GE085780.1|GE085780
EST:     GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATG                         GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG
genomic: GGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttg ... attgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTAAAGTGACGCAACCTCTCTCTCTTCTTTTCTTCAGTTCGGTGGAGGGAGGGAGCCGTAGCAGCGGAAGCTCTAGCTTGGGTAGCGAATCACAATGgtgagtgttgttgcctaatctcctcttcacaatggtttcgatcctttttctttcgacattttacttgaattaactctccaatctgtatgaaatgacctgg

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