Sequence
atgc intronic sequence ATGC exonic sequenceGCCTCTTGGGATGGTTCCCAGAACGCGTTCTGAGACCTTCCACGTGGCTCACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAGgtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcag
Basic information
species | Glycine max |
transcript | GLYMA16G23380.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G23380.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g03740.t01 (Vitis vinifera), 5'ss of exon 1
---GCCTCTTGGGATGGTTCCCAGAACGCGTTCTGAGACCTTCCACGTGGCTCACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAGgtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcag
|||| || || || | ||||| || || ||| |||| || || | ||||| ||||| | || |||||||||||||||||||| ||||| |||||||||| | | | | |||||| | || ||| |||||| | ||||||| | | || | | | || ||||| | | ||| | || | || |||| | |
AAAGCCTATTCGGGTG---TCAAGAACTCGATCAGAGTCCTTTCATGTCACCCACAAAGTCCCTGTTGGCGACACTCCTTATGTGAGAGCCAAAAAGGTTCAGgtaagct---tccgttctgggtaatcttgaaatttgc---------------caacaaac--cgaggtttcttcttttgcgtgattgatctctgtttgatgggtttgattatga-cttttgttgcatcag---------
upper sequence: GLYMA16G23380.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g03720.t01 (Vitis vinifera), 5'ss of exon 1
---GCCTCTTGGGATGGTTCCCAGAACGCGTTCTGAGACCTTCCACGTGGCTCACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAGgtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcag
||| ||||| || | ||||| || || || |||| || || | ||||| ||||| | || |||||||||||||||||||| ||||| |||||||||| | | | | ||||| | || ||| |||||| | ||||||| | | || | | | || ||||| | | |||| | || | || |||| | |
AAAGCCAATTGGGGTG---TCAAGAACTCGCTCAGACTCCTTTCATGTCACCCACAAAGTCCCTGTTGGCGACACTCCTTATGTGAGAGCCAAAAAGGTTCAGgtaagct---tccgttctgggaaatcttgaaatttgc---------------caacaaac--cgaggtttcttcttttgcgtgattgatctctgtttgatgggttggattatga-cttttgttgcatcag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4303289|gb|AI443455.1|AI443455EST: ACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAG TTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATT
genomic: ACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAGgtaaattcat ... gtgtgttcagTTGGTGAATAAGGACCCGGAGAGAGCGATTCCGCTGTTCTGGGCAGCCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCTCTTGGGATGGTTCCCAGAACGCGTTCTGAGACCTTCCACGTGGCTCACAAGGTCCCCATCGGTGACACTCCTTATGTGAGAGCAAAAAACGTTCAGgtaaattcatttcttcctgggtttttttttcttttcttttccttgtttattacaacaatctacgaggttcttgcccttttggggcttttcaatgtttcaagtgttgagtgttgttccttcgttggttttgtgtgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA